FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9602, 489 aa 1>>>pF1KB9602 489 - 489 aa - 489 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.7859+/-0.0012; mu= -16.8648+/- 0.073 mean_var=620.7373+/-126.687, 0's: 0 Z-trim(117.1): 83 B-trim: 232 in 2/53 Lambda= 0.051478 statistics sampled from 17762 (17842) to 17762 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.548), width: 16 Scan time: 3.720 The best scores are: opt bits E(32554) CCDS9636.1 FOXG1 gene_id:2290|Hs108|chr14 ( 489) 3454 271.0 2.1e-72 >>CCDS9636.1 FOXG1 gene_id:2290|Hs108|chr14 (489 aa) initn: 3454 init1: 3454 opt: 3454 Z-score: 1413.5 bits: 271.0 E(32554): 2.1e-72 Smith-Waterman score: 3454; 100.0% identity (100.0% similar) in 489 aa overlap (1-489:1-489) 10 20 30 40 50 60 pF1KB9 MLDMGDRKEVKMIPKSSFSINSLVPEAVQNDNHHASHGHHNSHHPQHHHHHHHHHHHPPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 MLDMGDRKEVKMIPKSSFSINSLVPEAVQNDNHHASHGHHNSHHPQHHHHHHHHHHHPPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 PAPQPPPPPQQQQPPPPPPPAPQPPQTRGAPAADDDKGPQQLLLPPPPPPPPAAALDGAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 PAPQPPPPPQQQQPPPPPPPAPQPPQTRGAPAADDDKGPQQLLLPPPPPPPPAAALDGAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 ADGLGGKGEPGGGPGELAPVGPDEKEKGAGAGGEEKKGAGEGGKDGEGGKEGEKKNGKYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 ADGLGGKGEPGGGPGELAPVGPDEKEKGAGAGGEEKKGAGEGGKDGEGGKEGEKKNGKYE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 KPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 KPPFSYNALIMMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 KVPRHYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRRSTTSRAKLAFKRGARLTSTGLTFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 KVPRHYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRRSTTSRAKLAFKRGARLTSTGLTFM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 DRAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQNSLGNNHSFSTAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 DRAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQNSLGNNHSFSTAN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 GLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTSYFFPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 GLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTSYFFPH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 VPHPSMTSQSSTSMSARAASSSTSPQAPSTLPCESLRPSLPSFTTGLSGGLSDYFTHQNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 VPHPSMTSQSSTSMSARAASSSTSPQAPSTLPCESLRPSLPSFTTGLSGGLSDYFTHQNQ 430 440 450 460 470 480 pF1KB9 GSSSNPLIH ::::::::: CCDS96 GSSSNPLIH 489 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:52:33 2016 done: Tue Nov 8 05:52:34 2016 Total Scan time: 3.720 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]