FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3234, 546 aa 1>>>pF1KE3234 546 - 546 aa - 546 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1724+/-0.000896; mu= 15.0685+/- 0.054 mean_var=117.6067+/-24.029, 0's: 0 Z-trim(109.5): 118 B-trim: 15 in 1/49 Lambda= 0.118266 statistics sampled from 10770 (10910) to 10770 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.335), width: 16 Scan time: 3.530 The best scores are: opt bits E(32554) CCDS9610.1 DCAF11 gene_id:80344|Hs108|chr14 ( 546) 3747 650.7 1.3e-186 CCDS41929.1 DCAF11 gene_id:80344|Hs108|chr14 ( 520) 3306 575.4 5.5e-164 >>CCDS9610.1 DCAF11 gene_id:80344|Hs108|chr14 (546 aa) initn: 3747 init1: 3747 opt: 3747 Z-score: 3463.9 bits: 650.7 E(32554): 1.3e-186 Smith-Waterman score: 3747; 99.8% identity (100.0% similar) in 546 aa overlap (1-546:1-546) 10 20 30 40 50 60 pF1KE3 MGSRNSSSAGSGSGDPSEGLPRRGAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 MGSRNSSSAGSGSGDPSEGLPRRGAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GGAANLQFIQALLDSEEENDRAWDGRLGDRYNPPVDATPDTRELEFNEIKTQVELATGQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 GGAANLQFIQALLDSEEENDRAWDGRLGDRYNPPVDATPDTRELEFNEIKTQVELATGQL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 GLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: CCDS96 SKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAPAPVPQSST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAPAPVPQSST 490 500 510 520 530 540 pF1KE3 PFSSPQ :::::: CCDS96 PFSSPQ >>CCDS41929.1 DCAF11 gene_id:80344|Hs108|chr14 (520 aa) initn: 3306 init1: 3306 opt: 3306 Z-score: 3057.5 bits: 575.4 E(32554): 5.5e-164 Smith-Waterman score: 3521; 95.1% identity (95.2% similar) in 546 aa overlap (1-546:1-520) 10 20 30 40 50 60 pF1KE3 MGSRNSSSAGSGSGDPSEGLPRRGAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQG :::::::::::::::::::::::::::::::::::::::::::: CCDS41 MGSRNSSSAGSGSGDPSEGLPRRGAGLRRSEEEEEEDEDVDLAQ---------------- 10 20 30 40 70 80 90 100 110 120 pF1KE3 GGAANLQFIQALLDSEEENDRAWDGRLGDRYNPPVDATPDTRELEFNEIKTQVELATGQL :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 ----------ALLDSEEENDRAWDGRLGDRYNPPVDATPDTRELEFNEIKTQVELATGQL 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 GLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 GLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIY 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 SKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: CCDS41 SKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRT 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE3 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE3 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKL 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE3 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE3 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAPAPVPQSST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAPAPVPQSST 460 470 480 490 500 510 pF1KE3 PFSSPQ :::::: CCDS41 PFSSPQ 520 546 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:29:16 2016 done: Sun Nov 6 14:29:16 2016 Total Scan time: 3.530 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]