(Circular) (Six-base) MAPSORT of: pFN21AE3031.seq Check: 2978 from: 1 to: 5173 pFN21AE3031 5173 bp With 182 enzymes: SgfI * December 28, 2011 15:25 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2983 278 Size: 53 83 186 936 1447 2468 Fragments arranged by size: 2468 1447 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2516 1937 Size: 579 4594 Acc65I G'GTAC_C Cuts at: 2494 2494 Size: 5173 AclI AA'CG_TT Cuts at: 1563 3300 3673 1563 Size: 1737 373 3063 Fragments arranged by size: 3063 1737 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3236 4620 4888 1632 Size: 1604 1384 268 1917 Fragments arranged by size: 1917 1604 1384 268 AfeI AGC'GCT Cuts at: 2255 2255 Size: 5173 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4976 AflIII A'CryG_T Cuts at: 1203 4072 5049 1203 Size: 2869 977 1327 Fragments arranged by size: 2869 1327 977 AgeI A'CCGG_T Cuts at: 4004 4004 Size: 5173 AhdI GACnn_n'nnGTC Cuts at: 3902 3902 Size: 5173 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5173 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5173 AlwNI CAG_nnn'CTG Cuts at: 2916 4488 2916 Size: 1572 3601 ApaLI G'TGCA_C Cuts at: 3230 4386 3230 Size: 1156 4017 ApoI r'AATT_y Cuts at: 1493 2482 2708 2860 4969 1493 Size: 989 226 152 2109 1697 Fragments arranged by size: 2109 1697 989 226 152 AseI AT'TA_AT Cuts at: 160 1032 3727 160 Size: 872 2695 1606 Fragments arranged by size: 2695 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5173 AvaI C'yCGr_G Cuts at: 1870 1943 2016 2349 2447 2498 1870 Size: 73 73 333 98 51 4545 Fragments arranged by size: 4545 333 98 73 73 51 BamHI G'GATC_C Cuts at: 2503 2870 2503 Size: 367 4806 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2034 2443 2494 3949 618 Size: 325 217 627 247 409 51 1455 1842 Fragments arranged by size: 1842 1455 627 409 325 247 217 51 BanII G_rGCy'C Cuts at: 1391 2064 2492 1391 Size: 673 428 4072 Fragments arranged by size: 4072 673 428 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4202 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3364 3398 1903 Size: 34 50 34 1343 34 3678 Fragments arranged by size: 3678 1343 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3065 4275 3065 Size: 1210 3963 BclI T'GATC_A Cuts at: 1548 1548 Size: 5173 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2183 3784 136 Size: 107 122 71 631 605 511 1601 1525 Fragments arranged by size: 1601 1525 631 605 511 122 107 71 BglII A'GATC_T Cuts at: 2424 5168 2424 Size: 2744 2429 BlpI GC'TnA_GC Cuts at: 2590 2590 Size: 5173 Bme1580I G_kGCm'C Cuts at: 1790 3234 4390 1790 Size: 1444 1156 2573 Fragments arranged by size: 2573 1444 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5173 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2236 2904 3862 Size: 416 53 83 399 24 819 668 958 Cuts at: 3862 442 Size: 1753 Fragments arranged by size: 1753 958 819 668 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5173 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2048 2219 3833 1239 Size: 809 171 1614 2579 Fragments arranged by size: 2579 1614 809 171 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3298 4163 4461 3298 Size: 865 298 4010 Fragments arranged by size: 4010 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2332 3836 882 Size: 617 833 1504 2219 Fragments arranged by size: 2219 1504 833 617 BsaAI yAC'GTr Cuts at: 493 1204 2964 493 Size: 711 1760 2702 Fragments arranged by size: 2702 1760 711 BsaBI GATnn'nnATC Cuts at: 5167 5167 Size: 5173 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2980 3362 3997 275 Size: 53 83 186 936 1447 382 635 1451 Fragments arranged by size: 1451 1447 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2430 3606 4004 4278 4425 4836 2430 Size: 1176 398 274 147 411 2767 Fragments arranged by size: 2767 1176 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4948 Fragments arranged by size: 4948 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2057 1186 Size: 871 4302 BseYI C'CCAG_C Cuts at: 4376 4872 4376 Size: 496 4677 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4600 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2263 2623 3384 4412 1540 Size: 275 186 262 360 761 1028 2301 Fragments arranged by size: 2301 1028 761 360 275 262 186 BsiHKAI G_wGCw'C Cuts at: 2017 2064 3234 3319 4390 2017 Size: 47 1170 85 1071 2800 Fragments arranged by size: 2800 1170 1071 85 47 BsmI GAATG_Cn' Cuts at: 2684 2777 2684 Size: 93 5080 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2017 2064 2492 3234 3319 4390 1391 Size: 399 227 47 428 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 428 399 227 85 47 BspEI T'CCGG_A Cuts at: 4836 4836 Size: 5173 BspHI T'CATG_A Cuts at: 3062 4792 3062 Size: 1730 3443 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2461 2528 844 Size: 1617 67 3489 Fragments arranged by size: 3489 1617 67 BsrBI CCG'CTC Cuts at: 1394 1823 3060 1394 Size: 429 1237 3507 Fragments arranged by size: 3507 1237 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2364 3668 3842 65 Size: 1183 1116 1304 174 1396 Fragments arranged by size: 1396 1304 1183 1116 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2031 3817 4004 1700 Size: 110 221 1786 187 2869 Fragments arranged by size: 2869 1786 221 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5173 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5173 BssSI C'ACGA_G Cuts at: 3233 4245 3233 Size: 1012 4161 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5173 BstBI TT'CG_AA Cuts at: 3977 3977 Size: 5173 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5173 BstYI r'GATC_y Cuts at: 1972 2424 2503 2870 3255 3272 4724 4810 4822 Size: 452 79 367 385 17 1452 86 12 Cuts at: 4822 5168 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 452 385 367 346 86 79 17 12 Bsu36I CC'TnA_GG Cuts at: 2040 2040 Size: 5173 BtgI C'CryG_G Cuts at: 513 1065 2187 513 Size: 552 1122 3499 Fragments arranged by size: 3499 1122 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4434 Fragments arranged by size: 4434 683 56 BtsI GCAGTG_nn' Cuts at: 2689 3483 3503 2689 Size: 794 20 4359 Fragments arranged by size: 4359 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5173 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5138 DraI TTT'AAA Cuts at: 2477 2477 Size: 5173 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4180 809 Size: 507 2864 1802 Fragments arranged by size: 2864 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2184 2620 3509 Size: 54 1425 50 275 18 354 436 889 Cuts at: 3509 5138 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 436 354 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2620 1537 Size: 275 808 4090 Fragments arranged by size: 4090 808 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2231 3103 1353 Size: 878 872 3423 Fragments arranged by size: 3423 878 872 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3760 4134 4280 387 Size: 1064 138 2171 374 146 1280 Fragments arranged by size: 2171 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2062 2062 Size: 5173 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2048 2219 3236 3833 4620 4888 1239 Size: 393 416 171 1017 597 787 268 1524 Fragments arranged by size: 1524 1017 787 597 416 393 268 171 EcoRI G'AATT_C Cuts at: 2482 2860 2482 Size: 378 4795 FspI TGC'GCA Cuts at: 3679 3679 Size: 5173 HaeII r_GCGC'y Cuts at: 1678 2195 2257 4320 1678 Size: 517 62 2063 2531 Fragments arranged by size: 2531 2063 517 62 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3814 3846 3888 3920 1373 Size: 32 135 32 2242 32 42 32 2626 Fragments arranged by size: 2626 2242 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2517 2763 669 Size: 988 281 579 246 3079 Fragments arranged by size: 3079 988 579 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5173 HpaI GTT'AAC Cuts at: 2763 2763 Size: 5173 KpnI G_GTAC'C Cuts at: 2498 2498 Size: 5173 MfeI C'AATT_G Cuts at: 2772 2772 Size: 5173 MluI A'CGCG_T Cuts at: 5049 5049 Size: 5173 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4287 4471 1305 Size: 2982 184 2007 Fragments arranged by size: 2982 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3351 Fragments arranged by size: 3351 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3131 3490 3649 518 Size: 648 1965 359 159 2042 Fragments arranged by size: 2042 1965 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2189 2339 2589 3266 4414 4659 1606 Size: 583 150 250 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 583 250 245 150 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4621 NdeI CA'TA_TG Cuts at: 387 387 Size: 5173 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5173 NotI GC'GGCC_GC Cuts at: 2620 2620 Size: 5173 NspI r_CATG'y Cuts at: 1132 1229 2531 4076 1132 Size: 97 1302 1545 2229 Fragments arranged by size: 2229 1545 1302 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5173 PciI A'CATG_T Cuts at: 4072 4072 Size: 5173 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5173 PmeI GTTT'AAAC Cuts at: 2477 2477 Size: 5173 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3242 3274 4755 4787 3242 Size: 32 1481 32 3628 Fragments arranged by size: 3628 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5173 PsiI TTA'TAA Cuts at: 2743 2743 Size: 5173 PstI C_TGCA'G Cuts at: 830 2525 830 Size: 1695 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5173 PvuII CAG'CTG Cuts at: 2339 2339 Size: 5173 SacI G_AGCT'C Cuts at: 2064 2064 Size: 5173 SacII CC_GC'GG Cuts at: 2190 2190 Size: 5173 SalI G'TCGA_C Cuts at: 1936 2515 1936 Size: 579 4594 SbfI CC_TGCA'GG Cuts at: 2525 2525 Size: 5173 ScaI AGT'ACT Cuts at: 2246 3421 5133 2246 Size: 1175 1712 2286 Fragments arranged by size: 2286 1712 1175 SfcI C'TryA_G Cuts at: 826 1045 2521 3656 4337 4528 826 Size: 219 1476 1135 681 191 1471 Fragments arranged by size: 1476 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5173 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5173 SmaI CCC'GGG Cuts at: 1872 2351 2449 2500 1872 Size: 479 98 51 4545 Fragments arranged by size: 4545 479 98 51 SmlI C'TyrA_G Cuts at: 820 1017 1943 2016 3277 4178 4440 820 Size: 197 926 73 1261 901 262 1553 Fragments arranged by size: 1553 1261 926 901 262 197 73 SnaBI TAC'GTA Cuts at: 493 2964 493 Size: 2471 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5173 SphI G_CATG'C Cuts at: 1132 2531 1132 Size: 1399 3774 SspI AAT'ATT Cuts at: 5 52 3097 5 Size: 47 3045 2081 Fragments arranged by size: 3045 2081 47 StuI AGG'CCT Cuts at: 1517 2087 1517 Size: 570 4603 StyI C'CwwG_G Cuts at: 513 1065 2612 513 Size: 552 1547 3074 Fragments arranged by size: 3074 1547 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2255 2277 3200 3217 3370 3555 4000 Size: 1255 675 22 923 17 153 185 445 Cuts at: 4000 325 Size: 1498 Fragments arranged by size: 1498 1255 923 675 445 185 153 22 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2244 3419 5131 Size: 274 80 33 51 1443 267 1175 1712 Cuts at: 5131 96 Size: 138 Fragments arranged by size: 1712 1443 1175 274 267 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2205 2237 5133 5165 2205 Size: 32 2896 32 2213 Fragments arranged by size: 2896 2213 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5173 XbaI T'CTAG_A Cuts at: 2509 2509 Size: 5173 XhoI C'TCGA_G Cuts at: 1943 2016 1943 Size: 73 5100 XmaI C'CCGG_G Cuts at: 1870 2349 2447 2498 1870 Size: 479 98 51 4545 Fragments arranged by size: 4545 479 98 51 XmnI GAAnn'nnTTC Cuts at: 3302 3302 Size: 5173 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2981 276 Size: 53 83 186 936 1447 2468 Fragments arranged by size: 2468 1447 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SacI SacII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI