Result of FASTA (ccds) for
pFN21AE5196
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5196, 161 aa
1>>>pF1KE5196 161 - 161 aa - 161 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1436+/-0.000634; mu= 13.2417+/- 0.038
mean_var=64.9016+/-12.576, 0's: 0 Z-trim(111.3): 14 B-trim: 17 in 2/48
Lambda= 0.159201
statistics sampled from 12225 (12238) to 12225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.376), width: 16
Scan time: 1.800
The best scores are: opt bits E(32554)
CCDS9561.1 RNASE2 gene_id:6036|Hs108|chr14 ( 161) 1141 269.9 4.7e-73
CCDS9560.1 RNASE3 gene_id:6037|Hs108|chr14 ( 160) 790 189.3 8.6e-49
CCDS9558.1 RNASE6 gene_id:6039|Hs108|chr14 ( 150) 424 105.2 1.7e-23
CCDS9567.1 RNASE8 gene_id:122665|Hs108|chr14 ( 154) 423 105.0 2e-23
CCDS41914.1 RNASE7 gene_id:84659|Hs108|chr14 ( 156) 414 102.9 8.4e-23
>>CCDS9561.1 RNASE2 gene_id:6036|Hs108|chr14 (161 aa)
initn: 1141 init1: 1141 opt: 1141 Z-score: 1425.1 bits: 269.9 E(32554): 4.7e-73
Smith-Waterman score: 1141; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE5 MVPKLFTSQICLLLLLGLLAVEGSLHVKPPQFTWAQWFETQHINMTSQQCTNAMQVINNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MVPKLFTSQICLLLLLGLLAVEGSLHVKPPQFTWAQWFETQHINMTSQQCTNAMQVINNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 QRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQNI
70 80 90 100 110 120
130 140 150 160
pF1KE5 SNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII
:::::::::::::::::::::::::::::::::::::::::
CCDS95 SNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII
130 140 150 160
>>CCDS9560.1 RNASE3 gene_id:6037|Hs108|chr14 (160 aa)
initn: 803 init1: 723 opt: 790 Z-score: 989.4 bits: 189.3 E(32554): 8.6e-49
Smith-Waterman score: 790; 68.9% identity (84.5% similar) in 161 aa overlap (1-161:1-160)
10 20 30 40 50 60
pF1KE5 MVPKLFTSQICLLLLLGLLAVEGSLHVKPPQFTWAQWFETQHINMTSQQCTNAMQVINNY
::::::::::::::::::..::::::..::::: :::: :::... .:: ::..::::
CCDS95 MVPKLFTSQICLLLLLGLMGVEGSLHARPPQFTRAQWFAIQHISLNPPRCTIAMRAINNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQNI
. ::::::::: :::::::::::: .. :: :.: .:::.: .:::.::.: .:. :::
CCDS95 RWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPLLHCDLINPGAQNI
70 80 90 100 110 120
130 140 150 160
pF1KE5 SNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII
::: ::. :. ::.::::::: : : :.::::::::: :
CCDS95 SNCTYADRPGRRFYVVACDNRDPR-DSPRYPVVPVHLDTTI
130 140 150 160
>>CCDS9558.1 RNASE6 gene_id:6039|Hs108|chr14 (150 aa)
initn: 401 init1: 231 opt: 424 Z-score: 535.5 bits: 105.2 E(32554): 1.7e-23
Smith-Waterman score: 424; 46.2% identity (68.6% similar) in 156 aa overlap (10-161:3-150)
10 20 30 40 50
pF1KE5 MVPKLFTSQICLLLLLGLLAVEGS---LHVKPPQFTWAQWFETQHINMTSQQCTNAMQVI
.:. ::: ::.. : ::. : ..: :.::: :::. . ::. ::. :
CCDS95 MVLCFPLLLLLLVLWGPVCPLHAWPKRLTKAHWFEIQHIQPSPLQCNRAMSGI
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 NNYQRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPS-
::: ..::.::::: .: ::. :: ...: .:. :.:::.:.. : . : ::. .
CCDS95 NNYTQHCKHQNTFLHDSFQNVAAVCDLLSIVC-KNR-RHNCHQSSKPVNMTDCRLTSGKY
60 70 80 90 100 110
120 130 140 150 160
pF1KE5 PQNISNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII
:: :::. . :.::::: :. ::: : .:::::: :.
CCDS95 PQ----CRYSAAAQYKFFIVACDP-PQKSDPP-YKLVPVHLDSIL
120 130 140 150
>>CCDS9567.1 RNASE8 gene_id:122665|Hs108|chr14 (154 aa)
initn: 424 init1: 265 opt: 423 Z-score: 534.1 bits: 105.0 E(32554): 2e-23
Smith-Waterman score: 423; 44.7% identity (71.3% similar) in 150 aa overlap (12-161:12-154)
10 20 30 40 50 60
pF1KE5 MVPKLFTSQICLLLLLGLLAVEGSLHVKPPQFTWAQWFETQHINMTSQQCTNAMQVINNY
::::::: ..: ...:: ..: .:::.:::.. . : :..::..::.:
CCDS95 MAPARAGCCPLLLLLLGLWVAEVLVRAKPKDMTSSQWFKTQHVQPSPQACNSAMSIINKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQNI
.:::. :::: :..:. .: .::..: .. ::::.: . . : .::. .
CCDS95 TERCKDLNTFLHEPFSSVAITCQTPNIACKNSC--KNCHQSHGPMSLTMGELTSG---KY
70 80 90 100 110
130 140 150 160
pF1KE5 SNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII
:::: . : :::::: :. :: ::.::::::...
CCDS95 PNCRYKEKHLNTPYIVACDP-PQQGDPG-YPLVPVHLDKVV
120 130 140 150
>>CCDS41914.1 RNASE7 gene_id:84659|Hs108|chr14 (156 aa)
initn: 363 init1: 197 opt: 414 Z-score: 522.8 bits: 102.9 E(32554): 8.4e-23
Smith-Waterman score: 414; 42.0% identity (69.3% similar) in 150 aa overlap (12-161:13-156)
10 20 30 40 50
pF1KE5 MVPKLFTSQICLLLLLGLLAVEGSLHVKPPQFTWAQWFETQHINMTSQQCTNAMQVINN
::::::: ..: . .:: .: .:::. ::.. . : :..::. ::.
CCDS41 MAPARAGFCPLLLLLLLGLWVAEIPVSAKPKGMTSSQWFKIQHMQPSPQACNSAMKNINK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 YQRRCKNQNTFLLTTFANVVNVCGNPNMTCPSNKTRKNCHHSGSQVPLIHCNLTTPSPQN
. .:::. :::: :..:. .: .:...: .. ::::.: . : : :.::. . :
CCDS41 HTKRCKDLNTFLHEPFSSVAATCQTPKIACKNGD--KNCHQSHGAVSLTMCKLTSGKHPN
70 80 90 100 110
120 130 140 150 160
pF1KE5 ISNCRYAQTPANMFYIVACDNRDQRRDPPQYPVVPVHLDRII
::: . : :.::: . :..: :. .:::::::..
CCDS41 ---CRYKEKRQNKSYVVAC-KPPQKKDSQQFHLVPVHLDRVL
120 130 140 150
161 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 22:27:18 2016 done: Mon Nov 7 22:27:18 2016
Total Scan time: 1.800 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]