FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5592, 494 aa 1>>>pF1KB5592 494 - 494 aa - 494 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7614+/-0.000512; mu= 12.9270+/- 0.031 mean_var=237.4320+/-48.003, 0's: 0 Z-trim(117.4): 417 B-trim: 98 in 2/50 Lambda= 0.083235 statistics sampled from 28771 (29276) to 28771 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.343), width: 16 Scan time: 8.310 The best scores are: opt bits E(85289) NP_004782 (OMIM: 604234) integrin beta-like protei ( 494) 3968 490.2 5.8e-138 XP_005254157 (OMIM: 604234) PREDICTED: integrin be ( 494) 3968 490.2 5.8e-138 NP_001258685 (OMIM: 604234) integrin beta-like pro ( 401) 3178 395.2 1.9e-109 NP_001258683 (OMIM: 604234) integrin beta-like pro ( 353) 2877 358.9 1.3e-98 NP_001258684 (OMIM: 604234) integrin beta-like pro ( 445) 2854 356.3 1e-97 XP_016878163 (OMIM: 612454) PREDICTED: multiple ep ( 854) 538 78.6 7.7e-14 XP_016878164 (OMIM: 612454) PREDICTED: multiple ep ( 854) 538 78.6 7.7e-14 XP_006724064 (OMIM: 116920,600065) PREDICTED: inte ( 700) 499 73.8 1.8e-12 NP_001290167 (OMIM: 116920,600065) integrin beta-2 ( 700) 499 73.8 1.8e-12 XP_016883830 (OMIM: 116920,600065) PREDICTED: inte ( 700) 499 73.8 1.8e-12 NP_000202 (OMIM: 116920,600065) integrin beta-2 is ( 769) 499 73.9 1.9e-12 NP_001120963 (OMIM: 116920,600065) integrin beta-2 ( 769) 499 73.9 1.9e-12 NP_001005731 (OMIM: 131800,147557,226650,226730) i (1752) 492 73.6 5.3e-12 NP_001308052 (OMIM: 131800,147557,226650,226730) i (1752) 492 73.6 5.3e-12 XP_006721933 (OMIM: 131800,147557,226650,226730) P (1787) 492 73.6 5.4e-12 NP_001005619 (OMIM: 131800,147557,226650,226730) i (1805) 492 73.6 5.4e-12 XP_011523053 (OMIM: 131800,147557,226650,226730) P (1807) 492 73.6 5.4e-12 NP_000204 (OMIM: 131800,147557,226650,226730) inte (1822) 492 73.6 5.4e-12 XP_006721931 (OMIM: 131800,147557,226650,226730) P (1840) 492 73.6 5.4e-12 XP_006721930 (OMIM: 131800,147557,226650,226730) P (1857) 492 73.6 5.5e-12 XP_005257366 (OMIM: 131800,147557,226650,226730) P (1875) 492 73.6 5.5e-12 XP_005257368 (OMIM: 131800,147557,226650,226730) P (1875) 492 73.6 5.5e-12 XP_006721929 (OMIM: 131800,147557,226650,226730) P (1910) 492 73.6 5.6e-12 XP_011539190 (OMIM: 604266) PREDICTED: multiple ep (1364) 489 73.0 5.9e-12 XP_011539189 (OMIM: 604266) PREDICTED: multiple ep (1395) 489 73.1 6e-12 XP_006710469 (OMIM: 604266) PREDICTED: multiple ep (1436) 489 73.1 6.1e-12 NP_001400 (OMIM: 604266) multiple epidermal growth (1541) 489 73.1 6.3e-12 XP_016856022 (OMIM: 604266) PREDICTED: multiple ep (1559) 489 73.1 6.4e-12 XP_011539188 (OMIM: 604266) PREDICTED: multiple ep (1560) 489 73.1 6.4e-12 XP_011539187 (OMIM: 604266) PREDICTED: multiple ep (1603) 489 73.1 6.5e-12 NP_002202 (OMIM: 135630) integrin beta-1 isoform 1 ( 798) 481 71.7 8.5e-12 NP_596867 (OMIM: 135630) integrin beta-1 isoform 1 ( 798) 481 71.7 8.5e-12 NP_391988 (OMIM: 135630) integrin beta-1 isoform 1 ( 801) 481 71.7 8.5e-12 NP_001243474 (OMIM: 612453,614399) multiple epider (1140) 456 69.0 8.3e-11 NP_115822 (OMIM: 612453,614399) multiple epidermal (1140) 456 69.0 8.3e-11 XP_011541996 (OMIM: 612453,614399) PREDICTED: mult (1140) 456 69.0 8.3e-11 XP_016865476 (OMIM: 612453,614399) PREDICTED: mult (1195) 456 69.0 8.5e-11 XP_016865477 (OMIM: 612453,614399) PREDICTED: mult ( 760) 446 67.5 1.5e-10 NP_000203 (OMIM: 173470,187800,273800,608446) inte ( 788) 431 65.7 5.4e-10 NP_001269319 (OMIM: 147558,616221) integrin beta-6 ( 650) 428 65.3 6.2e-10 NP_001269283 (OMIM: 147558,616221) integrin beta-6 ( 693) 428 65.3 6.5e-10 NP_001269318 (OMIM: 147558,616221) integrin beta-6 ( 715) 428 65.3 6.6e-10 NP_001269317 (OMIM: 147558,616221) integrin beta-6 ( 746) 428 65.3 6.7e-10 NP_000879 (OMIM: 147558,616221) integrin beta-6 is ( 788) 428 65.4 6.9e-10 NP_001269282 (OMIM: 147558,616221) integrin beta-6 ( 788) 428 65.4 6.9e-10 XP_016861844 (OMIM: 147561) PREDICTED: integrin be ( 661) 412 63.3 2.4e-09 XP_016861843 (OMIM: 147561) PREDICTED: integrin be ( 683) 412 63.4 2.4e-09 XP_016861842 (OMIM: 147561) PREDICTED: integrin be ( 691) 412 63.4 2.4e-09 XP_016861841 (OMIM: 147561) PREDICTED: integrin be ( 691) 412 63.4 2.4e-09 XP_016861840 (OMIM: 147561) PREDICTED: integrin be ( 691) 412 63.4 2.4e-09 >>NP_004782 (OMIM: 604234) integrin beta-like protein 1 (494 aa) initn: 3968 init1: 3968 opt: 3968 Z-score: 2597.9 bits: 490.2 E(85289): 5.8e-138 Smith-Waterman score: 3968; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494) 10 20 30 40 50 60 pF1KB5 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW 430 440 450 460 470 480 490 pF1KB5 NGNACEIWLGSEYP :::::::::::::: NP_004 NGNACEIWLGSEYP 490 >>XP_005254157 (OMIM: 604234) PREDICTED: integrin beta-l (494 aa) initn: 3968 init1: 3968 opt: 3968 Z-score: 2597.9 bits: 490.2 E(85289): 5.8e-138 Smith-Waterman score: 3968; 100.0% identity (100.0% similar) in 494 aa overlap (1-494:1-494) 10 20 30 40 50 60 pF1KB5 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW 430 440 450 460 470 480 490 pF1KB5 NGNACEIWLGSEYP :::::::::::::: XP_005 NGNACEIWLGSEYP 490 >>NP_001258685 (OMIM: 604234) integrin beta-like protein (401 aa) initn: 3174 init1: 3174 opt: 3178 Z-score: 2086.1 bits: 395.2 E(85289): 1.9e-109 Smith-Waterman score: 3178; 99.0% identity (99.2% similar) in 394 aa overlap (101-494:8-401) 80 90 100 110 120 130 pF1KB5 CGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQGWYGDACQYPT :. ::::::::::::::::::::::::: NP_001 MNLVAVMGAFNKGHGKCDCGKCKCDQGWYGDACQYPT 10 20 30 140 150 160 170 180 190 pF1KB5 NCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCECDDRECIDDET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCECDDRECIDDET 40 50 60 70 80 90 200 210 220 230 240 250 pF1KB5 EEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICSNRGTCVCGEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICSNRGTCVCGEC 100 110 120 130 140 150 260 270 280 290 300 310 pF1KB5 TCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKC 160 170 180 190 200 210 320 330 340 350 360 370 pF1KB5 EHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCED 220 230 240 250 260 270 380 390 400 410 420 430 pF1KB5 LDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADGILCSGKGSCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADGILCSGKGSCH 280 290 300 310 320 330 440 450 460 470 480 490 pF1KB5 CGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLG 340 350 360 370 380 390 pF1KB5 SEYP :::: NP_001 SEYP 400 >>NP_001258683 (OMIM: 604234) integrin beta-like protein (353 aa) initn: 2877 init1: 2877 opt: 2877 Z-score: 1891.3 bits: 358.9 E(85289): 1.3e-98 Smith-Waterman score: 2877; 100.0% identity (100.0% similar) in 353 aa overlap (142-494:1-353) 120 130 140 150 160 170 pF1KB5 CGKCKCDQGWYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSG :::::::::::::::::::::::::::::: NP_001 MCKNSQDIICSNAGTCHCGRCKCDNSDGSG 10 20 30 180 190 200 210 220 230 pF1KB5 LVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRC 40 50 60 70 80 90 240 250 260 270 280 290 pF1KB5 TSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGH 100 110 120 130 140 150 300 310 320 330 340 350 pF1KB5 GQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPP 160 170 180 190 200 210 360 370 380 390 400 410 pF1KB5 GDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQS 220 230 240 250 260 270 420 430 440 450 460 470 pF1KB5 KNLCESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KNLCESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSC 280 290 300 310 320 330 480 490 pF1KB5 GNCECWDGWNGNACEIWLGSEYP ::::::::::::::::::::::: NP_001 GNCECWDGWNGNACEIWLGSEYP 340 350 >>NP_001258684 (OMIM: 604234) integrin beta-like protein (445 aa) initn: 2789 init1: 2789 opt: 2854 Z-score: 1875.4 bits: 356.3 E(85289): 1e-97 Smith-Waterman score: 3470; 90.1% identity (90.1% similar) in 494 aa overlap (1-494:1-445) 10 20 30 40 50 60 pF1KB5 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQG :::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAG-------------- 70 80 90 100 130 140 150 160 170 180 pF1KB5 WYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCEC ::::::::::::::::::::::::: NP_001 -----------------------------------TCHCGRCKCDNSDGSGLVYGKFCEC 110 120 130 190 200 210 220 230 240 pF1KB5 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICS 140 150 160 170 180 190 250 260 270 280 290 300 pF1KB5 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCD 200 210 220 230 240 250 310 320 330 340 350 360 pF1KB5 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKT 260 270 280 290 300 310 370 380 390 400 410 420 pF1KB5 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADG 320 330 340 350 360 370 430 440 450 460 470 480 pF1KB5 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGW 380 390 400 410 420 430 490 pF1KB5 NGNACEIWLGSEYP :::::::::::::: NP_001 NGNACEIWLGSEYP 440 >>XP_016878163 (OMIM: 612454) PREDICTED: multiple epider (854 aa) initn: 196 init1: 100 opt: 538 Z-score: 369.5 bits: 78.6 E(85289): 7.7e-14 Smith-Waterman score: 554; 29.3% identity (44.8% similar) in 475 aa overlap (63-485:24-450) 40 50 60 70 80 90 pF1KB5 RSWPGAACRLSRAESERRCRAPGQPPGAALCHGRGRCD--CGVCICHVTEPGMFFGPLCE ::. :.:. :.: : ::: . :: . XP_016 MGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGACEC---EPG-YKGP--R 10 20 30 40 100 110 120 130 pF1KB5 CHEWVC-ETYDGSTCAGHGKCD------C----GKCKCDQGWYGDACQYPTNCDLTKKKS :.: .: : : :. :: : : : :. :: : :. .: . . XP_016 CQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCN--ESCPVGYYGD 50 60 70 80 90 100 140 150 160 170 180 190 pF1KB5 NQMCKNSQDIICSNAGTCHC--GRCKCDNSDG-SGLVYGKFCECDDR--ECIDDETEEIC . :. :.:.. :: : : : . : : : . : .: . . : XP_016 G--CQ--LPCTCQNGADCHSITGGCTC--APGFMGEVCAVSCAAGTYGPNCSSICS---C 110 120 130 140 150 200 210 220 230 240 250 pF1KB5 GGHGKC--YCGNCYCKAGWHGDKCEFQCDITPW--ESKRRCTSPDGKICSNRGTCVCGEC .. : : :.: :: ::.: : . : : . .. :: .: :: . : : XP_016 NNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSP----IDGSC 160 170 180 190 200 210 260 270 280 290 300 pF1KB5 TCHDVDPTGDWGDIHGDTCE--CDERDCRAVYDRYSDDFCSGHGQCN--CGRCDCKAGWY .: : : ::::: : . ... : :: :. :.: : ::: XP_016 SC-----TPGW---LGDTCELPCPDGTFGLNCSEHCD--CSHADGCDPVTGHCCCLAGWT 220 230 240 250 260 310 320 330 340 350 360 pF1KB5 GKK---CEHPQ-SCTLSAEESIRKCQGSSDLPCSGRGKC--ECGKCTCYPPGDRRVYGKT :. :.:: : . . . : . : . :.: : :.: : :: : : XP_016 GNLPLLCHHPGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCEC-APGFR---GPL 270 280 290 300 310 370 380 390 400 pF1KB5 CECDDRRCED-LDGVVCGG------HGTCSC----GRCVCERGWFGKLCQHPRKCNMTEE :. : : . : :. :.. : : : : :. : ::.. .. . XP_016 CQ---RICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQ 320 330 340 350 360 370 410 420 430 440 450 460 pF1KB5 QSKNLCESADGILCSG-KGSCHC-----GK-C--ICSAEEWYISGEFCDCDDRDCDKHDG . .:: :.. :: :::.: :: : : : : : . :. :.: XP_016 DCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFW---GPAC---FHACSCHNG 380 390 400 410 420 470 480 490 pF1KB5 LICTGNGICSCGNCECWDGWNGNACEIWLGSEYP :... : :.: ::.: : XP_016 ASCSAED----GACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGASCDHISGKCTCR 430 440 450 460 470 480 >>XP_016878164 (OMIM: 612454) PREDICTED: multiple epider (854 aa) initn: 196 init1: 100 opt: 538 Z-score: 369.5 bits: 78.6 E(85289): 7.7e-14 Smith-Waterman score: 554; 29.3% identity (44.8% similar) in 475 aa overlap (63-485:24-450) 40 50 60 70 80 90 pF1KB5 RSWPGAACRLSRAESERRCRAPGQPPGAALCHGRGRCD--CGVCICHVTEPGMFFGPLCE ::. :.:. :.: : ::: . :: . XP_016 MGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGACEC---EPG-YKGP--R 10 20 30 40 100 110 120 130 pF1KB5 CHEWVC-ETYDGSTCAGHGKCD------C----GKCKCDQGWYGDACQYPTNCDLTKKKS :.: .: : : :. :: : : : :. :: : :. .: . . XP_016 CQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCN--ESCPVGYYGD 50 60 70 80 90 100 140 150 160 170 180 190 pF1KB5 NQMCKNSQDIICSNAGTCHC--GRCKCDNSDG-SGLVYGKFCECDDR--ECIDDETEEIC . :. :.:.. :: : : : . : : : . : .: . . : XP_016 G--CQ--LPCTCQNGADCHSITGGCTC--APGFMGEVCAVSCAAGTYGPNCSSICS---C 110 120 130 140 150 200 210 220 230 240 250 pF1KB5 GGHGKC--YCGNCYCKAGWHGDKCEFQCDITPW--ESKRRCTSPDGKICSNRGTCVCGEC .. : : :.: :: ::.: : . : : . .. :: .: :: . : : XP_016 NNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSP----IDGSC 160 170 180 190 200 210 260 270 280 290 300 pF1KB5 TCHDVDPTGDWGDIHGDTCE--CDERDCRAVYDRYSDDFCSGHGQCN--CGRCDCKAGWY .: : : ::::: : . ... : :: :. :.: : ::: XP_016 SC-----TPGW---LGDTCELPCPDGTFGLNCSEHCD--CSHADGCDPVTGHCCCLAGWT 220 230 240 250 260 310 320 330 340 350 360 pF1KB5 GKK---CEHPQ-SCTLSAEESIRKCQGSSDLPCSGRGKC--ECGKCTCYPPGDRRVYGKT :. :.:: : . . . : . : . :.: : :.: : :: : : XP_016 GNLPLLCHHPGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCEC-APGFR---GPL 270 280 290 300 310 370 380 390 400 pF1KB5 CECDDRRCED-LDGVVCGG------HGTCSC----GRCVCERGWFGKLCQHPRKCNMTEE :. : : . : :. :.. : : : : :. : ::.. .. . XP_016 CQ---RICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQ 320 330 340 350 360 370 410 420 430 440 450 460 pF1KB5 QSKNLCESADGILCSG-KGSCHC-----GK-C--ICSAEEWYISGEFCDCDDRDCDKHDG . .:: :.. :: :::.: :: : : : : : . :. :.: XP_016 DCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFW---GPAC---FHACSCHNG 380 390 400 410 420 470 480 490 pF1KB5 LICTGNGICSCGNCECWDGWNGNACEIWLGSEYP :... : :.: ::.: : XP_016 ASCSAED----GACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGASCDHISGKCTCR 430 440 450 460 470 480 >>XP_006724064 (OMIM: 116920,600065) PREDICTED: integrin (700 aa) initn: 218 init1: 218 opt: 499 Z-score: 345.0 bits: 73.8 E(85289): 1.8e-12 Smith-Waterman score: 501; 34.0% identity (56.6% similar) in 235 aa overlap (87-310:374-574) 60 70 80 90 100 110 pF1KB5 PPGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVC--ETYDGSTCAGHGKCDCGK : :::. : .. : : : :.: .:: XP_006 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECR---CRDQSRDRSLCHGKGFLECGI 350 360 370 380 390 400 120 130 140 150 160 170 pF1KB5 CKCDQGWYGDACQYPTNCDLTKKKSNQM---C-KNSQDIICSNAGTCHCGRCKCDNSDGS :.:: :. : :. :. ..:... : :....::::. : : ::.: : .:: XP_006 CRCDTGYIGKNCE----CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVP 410 420 430 440 450 180 190 200 210 220 pF1KB5 G-LVYGKFCECDDRECIDDETEEICGGHGK--CYCGNCYCKAGWHGDKCEFQCDITPWES : :.::..:::: .: . . ..::: :. :.::.: :. :..:. : ::. .. XP_006 GKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC--QCE----RT 460 470 480 490 500 230 240 250 260 270 280 pF1KB5 KRRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTC-ECDERDCRAVYDRYSDD . : .: ::.:: : :. : :: .: . : :: : . .: XP_006 TEGCLNPRRVECSGRGRCRCNVCECH----SG----YQLPLCQECP--GCPSPCGKY--- 510 520 530 540 550 290 300 310 320 330 340 pF1KB5 FCSGHGQCNCGRC-DCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGK .:..: . : .::.: XP_006 -------ISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQ 560 570 580 590 600 >>NP_001290167 (OMIM: 116920,600065) integrin beta-2 iso (700 aa) initn: 218 init1: 218 opt: 499 Z-score: 345.0 bits: 73.8 E(85289): 1.8e-12 Smith-Waterman score: 501; 34.0% identity (56.6% similar) in 235 aa overlap (87-310:374-574) 60 70 80 90 100 110 pF1KB5 PPGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVC--ETYDGSTCAGHGKCDCGK : :::. : .. : : : :.: .:: NP_001 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECR---CRDQSRDRSLCHGKGFLECGI 350 360 370 380 390 400 120 130 140 150 160 170 pF1KB5 CKCDQGWYGDACQYPTNCDLTKKKSNQM---C-KNSQDIICSNAGTCHCGRCKCDNSDGS :.:: :. : :. :. ..:... : :....::::. : : ::.: : .:: NP_001 CRCDTGYIGKNCE----CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVP 410 420 430 440 450 180 190 200 210 220 pF1KB5 G-LVYGKFCECDDRECIDDETEEICGGHGK--CYCGNCYCKAGWHGDKCEFQCDITPWES : :.::..:::: .: . . ..::: :. :.::.: :. :..:. : ::. .. NP_001 GKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC--QCE----RT 460 470 480 490 500 230 240 250 260 270 280 pF1KB5 KRRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTC-ECDERDCRAVYDRYSDD . : .: ::.:: : :. : :: .: . : :: : . .: NP_001 TEGCLNPRRVECSGRGRCRCNVCECH----SG----YQLPLCQECP--GCPSPCGKY--- 510 520 530 540 550 290 300 310 320 330 340 pF1KB5 FCSGHGQCNCGRC-DCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGK .:..: . : .::.: NP_001 -------ISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQ 560 570 580 590 600 >>XP_016883830 (OMIM: 116920,600065) PREDICTED: integrin (700 aa) initn: 218 init1: 218 opt: 499 Z-score: 345.0 bits: 73.8 E(85289): 1.8e-12 Smith-Waterman score: 501; 34.0% identity (56.6% similar) in 235 aa overlap (87-310:374-574) 60 70 80 90 100 110 pF1KB5 PPGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVC--ETYDGSTCAGHGKCDCGK : :::. : .. : : : :.: .:: XP_016 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECR---CRDQSRDRSLCHGKGFLECGI 350 360 370 380 390 400 120 130 140 150 160 170 pF1KB5 CKCDQGWYGDACQYPTNCDLTKKKSNQM---C-KNSQDIICSNAGTCHCGRCKCDNSDGS :.:: :. : :. :. ..:... : :....::::. : : ::.: : .:: XP_016 CRCDTGYIGKNCE----CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVP 410 420 430 440 450 180 190 200 210 220 pF1KB5 G-LVYGKFCECDDRECIDDETEEICGGHGK--CYCGNCYCKAGWHGDKCEFQCDITPWES : :.::..:::: .: . . ..::: :. :.::.: :. :..:. : ::. .. XP_016 GKLIYGQYCECDTINC-ERYNGQVCGGPGRGLCFCGKCRCHPGFEGSAC--QCE----RT 460 470 480 490 500 230 240 250 260 270 280 pF1KB5 KRRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTC-ECDERDCRAVYDRYSDD . : .: ::.:: : :. : :: .: . : :: : . .: XP_016 TEGCLNPRRVECSGRGRCRCNVCECH----SG----YQLPLCQECP--GCPSPCGKY--- 510 520 530 540 550 290 300 310 320 330 340 pF1KB5 FCSGHGQCNCGRC-DCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGK .:..: . : .::.: XP_016 -------ISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQ 560 570 580 590 600 494 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 20:36:22 2016 done: Mon Nov 7 20:36:23 2016 Total Scan time: 8.310 Total Display time: 0.080 Function used was FASTA [36.3.4 Apr, 2011]