FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3072, 230 aa 1>>>pF1KE3072 230 - 230 aa - 230 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4164+/-0.00035; mu= 13.2228+/- 0.022 mean_var=62.2326+/-12.719, 0's: 0 Z-trim(114.0): 53 B-trim: 183 in 1/53 Lambda= 0.162579 statistics sampled from 23542 (23609) to 23542 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.277), width: 16 Scan time: 5.440 The best scores are: opt bits E(85289) NP_005993 (OMIM: 603090) ubiquitin carboxyl-termin ( 230) 1528 366.8 1.8e-101 XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin c ( 226) 1486 356.9 1.6e-98 NP_001257881 (OMIM: 603090) ubiquitin carboxyl-ter ( 194) 1265 305.0 5.7e-83 XP_016876215 (OMIM: 603090) PREDICTED: ubiquitin c ( 252) 1053 255.4 6.6e-68 XP_016876214 (OMIM: 603090) PREDICTED: ubiquitin c ( 261) 1053 255.4 6.8e-68 XP_011533514 (OMIM: 603090) PREDICTED: ubiquitin c ( 294) 1053 255.4 7.6e-68 XP_011533515 (OMIM: 603090) PREDICTED: ubiquitin c ( 290) 1011 245.5 6.9e-65 NP_004172 (OMIM: 191342,613643,615491) ubiquitin c ( 223) 856 209.1 4.8e-54 XP_011533516 (OMIM: 603090) PREDICTED: ubiquitin c ( 258) 790 193.7 2.5e-49 NP_001186192 (OMIM: 610667) ubiquitin carboxyl-ter ( 316) 299 78.6 1.4e-14 NP_001186191 (OMIM: 610667) ubiquitin carboxyl-ter ( 326) 299 78.6 1.4e-14 NP_001186190 (OMIM: 610667) ubiquitin carboxyl-ter ( 328) 299 78.6 1.4e-14 NP_057068 (OMIM: 610667) ubiquitin carboxyl-termin ( 329) 299 78.6 1.4e-14 XP_016856922 (OMIM: 610667) PREDICTED: ubiquitin c ( 384) 299 78.6 1.7e-14 XP_005245303 (OMIM: 610667) PREDICTED: ubiquitin c ( 393) 299 78.6 1.7e-14 XP_016856921 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 299 78.6 1.7e-14 XP_016856920 (OMIM: 610667) PREDICTED: ubiquitin c ( 394) 299 78.6 1.7e-14 XP_006711432 (OMIM: 610667) PREDICTED: ubiquitin c ( 410) 284 75.1 2e-13 XP_006711431 (OMIM: 610667) PREDICTED: ubiquitin c ( 411) 284 75.1 2e-13 XP_016856918 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 284 75.1 2.1e-13 XP_016856919 (OMIM: 610667) PREDICTED: ubiquitin c ( 420) 284 75.1 2.1e-13 XP_011507906 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 284 75.1 2.1e-13 XP_006711430 (OMIM: 610667) PREDICTED: ubiquitin c ( 421) 284 75.1 2.1e-13 XP_005245301 (OMIM: 610667) PREDICTED: ubiquitin c ( 422) 284 75.1 2.1e-13 XP_006711429 (OMIM: 610667) PREDICTED: ubiquitin c ( 423) 284 75.1 2.1e-13 XP_005245305 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 267 71.0 2.6e-12 XP_005245304 (OMIM: 610667) PREDICTED: ubiquitin c ( 320) 267 71.0 2.6e-12 XP_016856924 (OMIM: 610667) PREDICTED: ubiquitin c ( 348) 267 71.1 2.8e-12 XP_011507909 (OMIM: 610667) PREDICTED: ubiquitin c ( 347) 252 67.5 3.2e-11 XP_016856923 (OMIM: 610667) PREDICTED: ubiquitin c ( 375) 252 67.6 3.4e-11 XP_006711433 (OMIM: 610667) PREDICTED: ubiquitin c ( 376) 252 67.6 3.4e-11 XP_011532454 (OMIM: 603089,614327) PREDICTED: ubiq ( 714) 243 65.6 2.6e-10 NP_004647 (OMIM: 603089,614327) ubiquitin carboxyl ( 729) 243 65.6 2.6e-10 XP_011532452 (OMIM: 603089,614327) PREDICTED: ubiq ( 737) 243 65.6 2.7e-10 XP_011532451 (OMIM: 603089,614327) PREDICTED: ubiq ( 752) 243 65.6 2.7e-10 XP_016862792 (OMIM: 603089,614327) PREDICTED: ubiq ( 711) 236 63.9 8e-10 XP_011532453 (OMIM: 603089,614327) PREDICTED: ubiq ( 734) 236 63.9 8.2e-10 XP_016856926 (OMIM: 610667) PREDICTED: ubiquitin c ( 291) 221 60.2 4.2e-09 XP_016856925 (OMIM: 610667) PREDICTED: ubiquitin c ( 292) 221 60.2 4.2e-09 XP_011507911 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 206 56.7 5.2e-08 XP_011507910 (OMIM: 610667) PREDICTED: ubiquitin c ( 319) 206 56.7 5.2e-08 XP_016856933 (OMIM: 610667) PREDICTED: ubiquitin c ( 192) 157 45.2 9.6e-05 XP_016856932 (OMIM: 610667) PREDICTED: ubiquitin c ( 203) 157 45.2 0.0001 XP_016856931 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 157 45.2 0.0001 XP_016856930 (OMIM: 610667) PREDICTED: ubiquitin c ( 204) 157 45.2 0.0001 XP_005245306 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 157 45.2 0.0001 XP_016856929 (OMIM: 610667) PREDICTED: ubiquitin c ( 205) 157 45.2 0.0001 XP_016856928 (OMIM: 610667) PREDICTED: ubiquitin c ( 231) 142 41.7 0.0013 XP_006711434 (OMIM: 610667) PREDICTED: ubiquitin c ( 232) 142 41.7 0.0013 XP_016856927 (OMIM: 610667) PREDICTED: ubiquitin c ( 232) 142 41.7 0.0013 >>NP_005993 (OMIM: 603090) ubiquitin carboxyl-terminal h (230 aa) initn: 1528 init1: 1528 opt: 1528 Z-score: 1942.8 bits: 366.8 E(85289): 1.8e-101 Smith-Waterman score: 1528; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 190 200 210 220 230 >>XP_016876216 (OMIM: 603090) PREDICTED: ubiquitin carbo (226 aa) initn: 1406 init1: 1406 opt: 1486 Z-score: 1889.7 bits: 356.9 E(85289): 1.6e-98 Smith-Waterman score: 1486; 98.3% identity (98.3% similar) in 230 aa overlap (1-230:1-226) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :::::::::::::: :::::::::::::::::::::::::::::::::::::::::: XP_016 MEGQRWLPLEANPE----FLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 180 190 200 210 220 >>NP_001257881 (OMIM: 603090) ubiquitin carboxyl-termina (194 aa) initn: 1265 init1: 1265 opt: 1265 Z-score: 1610.6 bits: 305.0 E(85289): 5.7e-83 Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 194 aa overlap (37-230:1-194) 10 20 30 40 50 60 pF1KE3 LPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFR :::::::::::::::::::::::::::::: NP_001 MDPELLSMVPRPVCAVLLLFPITEKYEVFR 10 20 30 70 80 90 100 110 120 pF1KE3 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR 100 110 120 130 140 150 190 200 210 220 230 pF1KE3 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::::::::::::::::::::::::::::::::::::::: NP_001 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 160 170 180 190 >>XP_016876215 (OMIM: 603090) PREDICTED: ubiquitin carbo (252 aa) initn: 1213 init1: 1053 opt: 1053 Z-score: 1340.1 bits: 255.4 E(85289): 6.6e-68 Smith-Waterman score: 1084; 74.2% identity (74.2% similar) in 248 aa overlap (1-184:1-248) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK 70 80 90 100 110 120 130 140 150 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---------------------- :::::::::::::::::::::::::::::::::::::: XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC 130 140 150 160 170 180 160 170 pF1KE3 ------------------------------------------APSIDEKVDLHFIALVHV :::::::::::::::::: XP_016 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV 190 200 210 220 230 240 180 190 200 210 220 230 pF1KE3 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::: XP_016 DGHLYELDLLEF 250 >>XP_016876214 (OMIM: 603090) PREDICTED: ubiquitin carbo (261 aa) initn: 1205 init1: 1053 opt: 1053 Z-score: 1339.9 bits: 255.4 E(85289): 6.8e-68 Smith-Waterman score: 1080; 72.4% identity (73.2% similar) in 254 aa overlap (1-190:1-254) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK 70 80 90 100 110 120 130 140 150 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---------------------- :::::::::::::::::::::::::::::::::::::: XP_016 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC 130 140 150 160 170 180 160 170 pF1KE3 ------------------------------------------APSIDEKVDLHFIALVHV :::::::::::::::::: XP_016 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV 190 200 210 220 230 240 180 190 200 210 220 230 pF1KE3 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA ::::::: . . : XP_016 DGHLYELGNFHSHPNLQQPPS 250 260 >>XP_011533514 (OMIM: 603090) PREDICTED: ubiquitin carbo (294 aa) initn: 1519 init1: 1053 opt: 1053 Z-score: 1339.0 bits: 255.4 E(85289): 7.6e-68 Smith-Waterman score: 1187; 75.6% identity (75.6% similar) in 262 aa overlap (1-198:1-262) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK 70 80 90 100 110 120 130 140 150 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---------------------- :::::::::::::::::::::::::::::::::::::: XP_011 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC 130 140 150 160 170 180 160 170 pF1KE3 ------------------------------------------APSIDEKVDLHFIALVHV :::::::::::::::::: XP_011 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV 190 200 210 220 230 240 180 190 200 210 220 230 pF1KE3 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::::::::::::::::: XP_011 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 250 260 270 280 290 >>XP_011533515 (OMIM: 603090) PREDICTED: ubiquitin carbo (290 aa) initn: 1487 init1: 925 opt: 1011 Z-score: 1285.9 bits: 245.5 E(85289): 6.9e-65 Smith-Waterman score: 1145; 74.0% identity (74.0% similar) in 262 aa overlap (1-198:1-258) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :::::::::::::: :::::::::::::::::::::::::::::::::::::::::: XP_011 MEGQRWLPLEANPE----FLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK 60 70 80 90 100 110 130 140 150 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---------------------- :::::::::::::::::::::::::::::::::::::: XP_011 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLC 120 130 140 150 160 170 160 170 pF1KE3 ------------------------------------------APSIDEKVDLHFIALVHV :::::::::::::::::: XP_011 HHASLPWVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHV 180 190 200 210 220 230 180 190 200 210 220 230 pF1KE3 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::::::::::::::::: XP_011 DGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 240 250 260 270 280 290 >>NP_004172 (OMIM: 191342,613643,615491) ubiquitin carbo (223 aa) initn: 621 init1: 342 opt: 856 Z-score: 1091.2 bits: 209.1 E(85289): 4.8e-54 Smith-Waterman score: 856; 55.2% identity (83.4% similar) in 223 aa overlap (8-230:5-222) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.: NP_004 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK ..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.:: NP_004 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL .:: :. .::::.::. .:. .::...:.. :.::: . .:.::..::: . .::::: NP_004 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHL 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::: :::.::: .:..:::.:: .::..: ::. :.::.:.:: : NP_004 YELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 180 190 200 210 220 >>XP_011533516 (OMIM: 603090) PREDICTED: ubiquitin carbo (258 aa) initn: 1256 init1: 790 opt: 790 Z-score: 1006.6 bits: 193.7 E(85289): 2.5e-49 Smith-Waterman score: 924; 71.7% identity (71.7% similar) in 226 aa overlap (37-198:1-226) 10 20 30 40 50 60 pF1KE3 LPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFR :::::::::::::::::::::::::::::: XP_011 MDPELLSMVPRPVCAVLLLFPITEKYEVFR 10 20 30 70 80 90 100 110 120 pF1KE3 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES 40 50 60 70 80 90 130 140 150 pF1KE3 VSMSPEERARYLENYDAIRVTHETSAHEGQTE---------------------------- :::::::::::::::::::::::::::::::: XP_011 VSMSPEERARYLENYDAIRVTHETSAHEGQTESSSPSSSQPHSSHCRTKASSLCHHASLP 100 110 120 130 140 150 160 170 180 pF1KE3 ------------------------------------APSIDEKVDLHFIALVHVDGHLYE :::::::::::::::::::::::: XP_011 WVKRNHVGPAKATSPSLRLRRWRPFLRLPSLGLHSVAPSIDEKVDLHFIALVHVDGHLYE 160 170 180 190 200 210 190 200 210 220 230 pF1KE3 LDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::::::::::: XP_011 LDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 220 230 240 250 >>NP_001186192 (OMIM: 610667) ubiquitin carboxyl-termina (316 aa) initn: 177 init1: 98 opt: 299 Z-score: 382.8 bits: 78.6 E(85289): 1.4e-14 Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223) 10 20 30 40 50 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI : .:..: : ....: .: . : ......:: . . .:: ....:: NP_001 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG :.. :: : :: ....: ::.:.:::.: ... .. : ... .:. : NP_001 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL ::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::.. NP_001 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA : :.:.:::::: . ::. : ... . . : .: ... . :.::: .:. NP_001 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 170 180 190 200 210 220 NP_001 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK 230 240 250 260 270 280 230 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:19:31 2016 done: Sun Nov 6 05:19:32 2016 Total Scan time: 5.440 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]