FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3072, 230 aa 1>>>pF1KE3072 230 - 230 aa - 230 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4390+/-0.000804; mu= 13.0701+/- 0.049 mean_var=59.1636+/-11.841, 0's: 0 Z-trim(106.8): 23 B-trim: 0 in 0/50 Lambda= 0.166743 statistics sampled from 9204 (9218) to 9204 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.283), width: 16 Scan time: 2.200 The best scores are: opt bits E(32554) CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13 ( 230) 1528 375.7 1.4e-104 CCDS73586.1 UCHL3 gene_id:7347|Hs108|chr13 ( 194) 1265 312.4 1.3e-85 CCDS3462.1 UCHL1 gene_id:7345|Hs108|chr4 ( 223) 856 214.0 6.3e-56 CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1 ( 316) 299 80.1 1.9e-15 CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1 ( 326) 299 80.1 1.9e-15 CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1 ( 328) 299 80.1 1.9e-15 CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1 ( 329) 299 80.1 2e-15 CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3 ( 729) 243 66.7 4.6e-11 >>CCDS9453.1 UCHL3 gene_id:7347|Hs108|chr13 (230 aa) initn: 1528 init1: 1528 opt: 1528 Z-score: 1990.9 bits: 375.7 E(32554): 1.4e-104 Smith-Waterman score: 1528; 100.0% identity (100.0% similar) in 230 aa overlap (1-230:1-230) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 190 200 210 220 230 >>CCDS73586.1 UCHL3 gene_id:7347|Hs108|chr13 (194 aa) initn: 1265 init1: 1265 opt: 1265 Z-score: 1650.2 bits: 312.4 E(32554): 1.3e-85 Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 194 aa overlap (37-230:1-194) 10 20 30 40 50 60 pF1KE3 LPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFR :::::::::::::::::::::::::::::: CCDS73 MDPELLSMVPRPVCAVLLLFPITEKYEVFR 10 20 30 70 80 90 100 110 120 pF1KE3 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEES 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 VSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHLYELDGR 100 110 120 130 140 150 190 200 210 220 230 pF1KE3 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::::::::::::::::::::::::::::::::::::::::: CCDS73 KPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA 160 170 180 190 >>CCDS3462.1 UCHL1 gene_id:7345|Hs108|chr4 (223 aa) initn: 621 init1: 342 opt: 856 Z-score: 1117.5 bits: 214.0 E(32554): 6.3e-56 Smith-Waterman score: 856; 55.2% identity (83.4% similar) in 223 aa overlap (8-230:5-222) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :.: :::. :. :..::. .:.:::: :.. : :. :: :.::.:::::.: CCDS34 MQLKPMEINPEMLNKVLSRLGVAGQWRFVDVLGLEEESLGSVPAPACALLLLFPLTA 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 KYEVFRTEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLK ..: :: .. :..: ::.:. .::::::::.:.:::::::::.:::.::. ::.::.:: CCDS34 QHENFRKKQIEELK--GQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLK 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 KFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSIDEKVDLHFIALVHVDGHL .:: :. .::::.::. .:. .::...:.. :.::: . .:.::..::: . .::::: CCDS34 QFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCR---VDDKVNFHFILFNNVDGHL 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 YELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA :::::: :::.::: .:..:::.:: .::..: ::. :.::.:.:: : CCDS34 YELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 180 190 200 210 220 >>CCDS55669.1 UCHL5 gene_id:51377|Hs108|chr1 (316 aa) initn: 177 init1: 98 opt: 299 Z-score: 390.9 bits: 80.1 E(32554): 1.9e-15 Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223) 10 20 30 40 50 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI : .:..: : ....: .: . : ......:: . . .:: ....:: CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG :.. :: : :: ....: ::.:.:::.: ... .. : ... .:. : CCDS55 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL ::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::.. CCDS55 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA : :.:.:::::: . ::. : ... . . : .: ... . :.::: .:. CCDS55 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 170 180 190 200 210 220 CCDS55 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK 230 240 250 260 270 280 >>CCDS55670.1 UCHL5 gene_id:51377|Hs108|chr1 (326 aa) initn: 177 init1: 98 opt: 299 Z-score: 390.7 bits: 80.1 E(32554): 1.9e-15 Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223) 10 20 30 40 50 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI : .:..: : ....: .: . : ......:: . . .:: ....:: CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG :.. :: : :: ....: ::.:.:::.: ... .. : ... .:. : CCDS55 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL ::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::.. CCDS55 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA : :.:.:::::: . ::. : ... . . : .: ... . :.::: .:. CCDS55 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 170 180 190 200 210 220 CCDS55 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK 230 240 250 260 270 280 >>CCDS55668.1 UCHL5 gene_id:51377|Hs108|chr1 (328 aa) initn: 177 init1: 98 opt: 299 Z-score: 390.6 bits: 80.1 E(32554): 1.9e-15 Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223) 10 20 30 40 50 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI : .:..: : ....: .: . : ......:: . . .:: ....:: CCDS55 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG :.. :: : :: ....: ::.:.:::.: ... .. : ... .:. : CCDS55 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL ::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::.. CCDS55 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA : :.:.:::::: . ::. : ... . . : .: ... . :.::: .:. CCDS55 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 170 180 190 200 210 220 CCDS55 MIYEQKIAELQRQLAEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRK 230 240 250 260 270 280 >>CCDS1378.1 UCHL5 gene_id:51377|Hs108|chr1 (329 aa) initn: 177 init1: 98 opt: 299 Z-score: 390.6 bits: 80.1 E(32554): 2e-15 Smith-Waterman score: 299; 29.4% identity (62.3% similar) in 228 aa overlap (6-227:8-223) 10 20 30 40 50 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPI : .:..: : ....: .: . : ......:: . . .:: ....:: CCDS13 MTGNAGEWCLMESDPGVFTELIKGFGCRGA-QVEEIWSLEPENFEKL-KPVHGLIFLF-- 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 TEKYEVFRTEEEEKIKSQGQDVT-SSVYFMKQTISNACGTIGLIHAIAN-NKDKMHFESG :.. :: : :: ....: ::.:.:::.: ... .. : ... .:. : CCDS13 --KWQ----PGEEPAGSVVQDSRLDTIFFAKQVINNACATQAIVSVLLNCTHQDVHL--G 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 STLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTE---APSIDEKVDLHFIAL ::..: : : :.. .. : : :.:: .:.. :.. . : : :. .::.. CCDS13 ETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSY 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 VHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPD-ELRFNAIALSAA : :.:.:::::: . ::. : ... . . : .: ... . :.::: .:. CCDS13 VPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRK 170 180 190 200 210 220 CCDS13 MIYEQKIAELQRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRR 230 240 250 260 270 280 >>CCDS2853.1 BAP1 gene_id:8314|Hs108|chr3 (729 aa) initn: 141 init1: 112 opt: 243 Z-score: 312.2 bits: 66.7 E(32554): 4.6e-11 Smith-Waterman score: 243; 24.7% identity (56.9% similar) in 239 aa overlap (6-227:5-233) 10 20 30 40 50 60 pF1KE3 MEGQRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITE :: ::..: . . .....:.. . : ..: .: : :: . ..:: : CCDS28 MNKGWLELESDPGLFTLLVEDFGVK-GVQVEEIY----DLQSKCQGPVYGFIFLFKWIE 10 20 30 40 50 70 80 90 100 110 pF1KE3 KYEVFR--TEEEEKIKSQGQDVTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGST . . : . . . .:......: .: : :.:.: .:. .. : .. . : : CCDS28 ERRSRRKVSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLNCSS---VDLGPT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LKKFLEESVSMSPEERARYLENYDAIRVTHETSAH-------EGQTEAPSIDEKVDLHFI :... . . ..::: .. . : . .:.. :. : :. .. .::. CCDS28 LSRMKDFTKGFSPESKGYAIGNAPELAKAHNSHARPEPRHLPEKQNGLSAVRTMEAFHFV 120 130 140 150 160 170 180 190 200 210 220 pF1KE3 ALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMER-------DP-DELRFN . : . :.:.:::: : .::.:: ... : . . .::: .: ..::: CCDS28 SYVPITGRLFELDGLKVYPIDHGPWGEDEEWTDKAR--RVIMERIGLATAGEPYHDIRFN 180 190 200 210 220 230 pF1KE3 AIALSAA .:. CCDS28 LMAVVPDRRIKYEARLHVLKVNRQTVLEALQQLIRVTQPELIQTHKSQESQLPEESKSAS 230 240 250 260 270 280 230 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 05:19:30 2016 done: Sun Nov 6 05:19:30 2016 Total Scan time: 2.200 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]