FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1984, 559 aa 1>>>pF1KE1984 559 - 559 aa - 559 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2498+/-0.000958; mu= 4.4384+/- 0.057 mean_var=127.2605+/-26.066, 0's: 0 Z-trim(108.5): 19 B-trim: 221 in 1/52 Lambda= 0.113691 statistics sampled from 10232 (10236) to 10232 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.314), width: 16 Scan time: 3.530 The best scores are: opt bits E(32554) CCDS9446.2 BORA gene_id:79866|Hs108|chr13 ( 619) 3740 624.9 8.6e-179 CCDS73583.1 BORA gene_id:79866|Hs108|chr13 ( 634) 3740 624.9 8.8e-179 CCDS66560.1 BORA gene_id:79866|Hs108|chr13 ( 489) 3157 529.3 4.2e-150 >>CCDS9446.2 BORA gene_id:79866|Hs108|chr13 (619 aa) initn: 3740 init1: 3740 opt: 3740 Z-score: 3323.4 bits: 624.9 E(32554): 8.6e-179 Smith-Waterman score: 3740; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:61-619) 10 20 30 pF1KE1 MGDVKESKMQITPETPGRIPVLNPFESPSD :::::::::::::::::::::::::::::: CCDS94 CLSWKLAWPPELPGVGTGGFVLYAPFSLCAMGDVKESKMQITPETPGRIPVLNPFESPSD 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE1 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE1 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS 160 170 180 190 200 210 160 170 180 190 200 210 pF1KE1 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS 220 230 240 250 260 270 220 230 240 250 260 270 pF1KE1 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS 280 290 300 310 320 330 280 290 300 310 320 330 pF1KE1 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW 340 350 360 370 380 390 340 350 360 370 380 390 pF1KE1 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN 400 410 420 430 440 450 400 410 420 430 440 450 pF1KE1 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE 460 470 480 490 500 510 460 470 480 490 500 510 pF1KE1 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD 520 530 540 550 560 570 520 530 540 550 pF1KE1 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS94 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP 580 590 600 610 >>CCDS73583.1 BORA gene_id:79866|Hs108|chr13 (634 aa) initn: 3740 init1: 3740 opt: 3740 Z-score: 3323.2 bits: 624.9 E(32554): 8.8e-179 Smith-Waterman score: 3740; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:76-634) 10 20 30 pF1KE1 MGDVKESKMQITPETPGRIPVLNPFESPSD :::::::::::::::::::::::::::::: CCDS73 SHSIQGSRLHLNLPEVDSFPPHPAKFSLCAMGDVKESKMQITPETPGRIPVLNPFESPSD 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE1 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 YSNLHEQTLASPSVFKSTKLPTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHSRIDK 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE1 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 DVEDKRQKAIEEFFTKDVIVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKS 170 180 190 200 210 220 160 170 180 190 200 210 pF1KE1 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 DAACQTLLSLPVDFNLENILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPS 230 240 250 260 270 280 220 230 240 250 260 270 pF1KE1 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 ASPGSPHSGVQTSLEMFYSIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPS 290 300 310 320 330 340 280 290 300 310 320 330 pF1KE1 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 PISSPTFSPIEFQIGETPLSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNW 350 360 370 380 390 400 340 350 360 370 380 390 pF1KE1 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 SPMRLQMYSGGTQYRTSVIQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSN 410 420 430 440 450 460 400 410 420 430 440 450 pF1KE1 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 EASTHGTHLVVTAMSVTQNQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKE 470 480 490 500 510 520 460 470 480 490 500 510 pF1KE1 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 PVDNGSLPMTDFVSGIAFSIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMD 530 540 550 560 570 580 520 530 540 550 pF1KE1 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 TVGAESYCKESDAQTCEVESKSQAFNMKQDHTTQRCWMKTASPFQCSSP 590 600 610 620 630 >>CCDS66560.1 BORA gene_id:79866|Hs108|chr13 (489 aa) initn: 3155 init1: 3155 opt: 3157 Z-score: 2808.3 bits: 529.3 E(32554): 4.2e-150 Smith-Waterman score: 3157; 98.5% identity (99.6% similar) in 481 aa overlap (81-559:9-489) 60 70 80 90 100 pF1KE1 PTPGKFRWSIDQLAVINPVEIDPEDIHRQALYLSHS--RIDKDVEDKRQKAIEEFFTKDV :.:... .::::::::::::::::::::: CCDS66 MNKLSPVLLFLNQQNYQIDKDVEDKRQKAIEEFFTKDV 10 20 30 110 120 130 140 150 160 pF1KE1 IVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKSDAACQTLLSLPVDFNLEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 IVPSPWTDHEGKQLSQCHSSKCTNINSDSPVGKKLTIHSEKSDAACQTLLSLPVDFNLEN 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE1 ILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPSASPGSPHSGVQTSLEMFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 ILGDYFRADEFADQSPGNLSSSSLRRKLFLDGNGSISDSLPSASPGSPHSGVQTSLEMFY 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE1 SIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPIEFQIGETP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 SIDLSPVKCRSPLQTPSSGQFSSSPIQASAKKYSLGSITSPSPISSPTFSPIEFQIGETP 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE1 LSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 LSEQRKFTVHSPDASSGTNSNGITNPCIRSPYIDGCSPIKNWSPMRLQMYSGGTQYRTSV 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE1 IQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 IQIPFTLETQGEDEEDKENIPSTDVSSPAMDAAGIHLRQFSNEASTHGTHLVVTAMSVTQ 280 290 300 310 320 330 410 420 430 440 450 460 pF1KE1 NQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 NQSSASEKELALLQDVEREKDNNTVDMVDPIEIADETTWIKEPVDNGSLPMTDFVSGIAF 340 350 360 370 380 390 470 480 490 500 510 520 pF1KE1 SIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 SIENSHMCMSPLAESSVIPCESSNIQMDSGYNTQNCGSNIMDTVGAESYCKESDAQTCEV 400 410 420 430 440 450 530 540 550 pF1KE1 ESKSQAFNMKQDHTTQRCWMKTASPFQCSSP ::::::::::::::::::::::::::::::: CCDS66 ESKSQAFNMKQDHTTQRCWMKTASPFQCSSP 460 470 480 559 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:35:03 2016 done: Sun Nov 6 14:35:03 2016 Total Scan time: 3.530 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]