FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3006, 85 aa 1>>>pF1KE3006 85 - 85 aa - 85 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2870+/-0.000294; mu= 7.2835+/- 0.018 mean_var=52.5207+/-10.444, 0's: 0 Z-trim(116.1): 10 B-trim: 0 in 0/52 Lambda= 0.176974 statistics sampled from 26952 (26957) to 26952 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.316), width: 16 Scan time: 4.080 The best scores are: opt bits E(85289) NP_057701 (OMIM: 610553) ubiquitin-fold modifier 1 ( 85) 543 146.1 6.5e-36 NP_001273632 (OMIM: 610553) ubiquitin-fold modifie ( 83) 519 140.0 4.4e-34 NP_001273633 (OMIM: 610553) ubiquitin-fold modifie ( 103) 417 113.9 3.7e-26 NP_001273634 (OMIM: 610553) ubiquitin-fold modifie ( 71) 398 109.1 7.6e-25 NP_001273635 (OMIM: 610553) ubiquitin-fold modifie ( 71) 398 109.1 7.6e-25 >>NP_057701 (OMIM: 610553) ubiquitin-fold modifier 1 iso (85 aa) initn: 543 init1: 543 opt: 543 Z-score: 765.8 bits: 146.1 E(85289): 6.5e-36 Smith-Waterman score: 543; 100.0% identity (100.0% similar) in 85 aa overlap (1-85:1-85) 10 20 30 40 50 60 pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA 10 20 30 40 50 60 70 80 pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC ::::::::::::::::::::::::: NP_057 QTAGNVFLKHGSELRIIPRDRVGSC 70 80 >>NP_001273632 (OMIM: 610553) ubiquitin-fold modifier 1 (83 aa) initn: 407 init1: 407 opt: 519 Z-score: 732.8 bits: 140.0 E(85289): 4.4e-34 Smith-Waterman score: 519; 97.6% identity (97.6% similar) in 85 aa overlap (1-85:1-83) 10 20 30 40 50 60 pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: NP_001 MSKVSFKITLTSDPRLPYKV--VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA 10 20 30 40 50 70 80 pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC ::::::::::::::::::::::::: NP_001 QTAGNVFLKHGSELRIIPRDRVGSC 60 70 80 >>NP_001273633 (OMIM: 610553) ubiquitin-fold modifier 1 (103 aa) initn: 417 init1: 417 opt: 417 Z-score: 590.5 bits: 113.9 E(85289): 3.7e-26 Smith-Waterman score: 417; 100.0% identity (100.0% similar) in 65 aa overlap (21-85:39-103) 10 20 30 40 50 pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAII :::::::::::::::::::::::::::::: NP_001 TPRSLHLFTSSTFLARALPGAFPTGACEERLSVPESTPFTAVLKFAAEEFKVPAATSAII 10 20 30 40 50 60 60 70 80 pF1KE3 TNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGSC ::::::::::::::::::::::::::::::::::: NP_001 TNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGSC 70 80 90 100 >>NP_001273634 (OMIM: 610553) ubiquitin-fold modifier 1 (71 aa) initn: 398 init1: 398 opt: 398 Z-score: 567.0 bits: 109.1 E(85289): 7.6e-25 Smith-Waterman score: 398; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64) 10 20 30 40 50 60 pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA 10 20 30 40 50 60 70 80 pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC :::: NP_001 QTAGLAVEIQP 70 >>NP_001273635 (OMIM: 610553) ubiquitin-fold modifier 1 (71 aa) initn: 398 init1: 398 opt: 398 Z-score: 567.0 bits: 109.1 E(85289): 7.6e-25 Smith-Waterman score: 398; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64) 10 20 30 40 50 60 pF1KE3 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPA 10 20 30 40 50 60 70 80 pF1KE3 QTAGNVFLKHGSELRIIPRDRVGSC :::: NP_001 QTAGLAVEIQP 70 85 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:36:50 2016 done: Sun Nov 6 14:36:51 2016 Total Scan time: 4.080 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]