FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1646, 161 aa
  1>>>pF1KE1646 161 - 161 aa - 161 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4100+/-0.000985; mu= 10.8633+/- 0.058
 mean_var=52.1974+/-10.920, 0's: 0 Z-trim(102.4): 16  B-trim: 41 in 1/47
 Lambda= 0.177521
 statistics sampled from 6907 (6915) to 6907 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.588), E-opt: 0.2 (0.212), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13         ( 161) 1046 275.8   8e-75
CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13        ( 218) 1046 275.8 1.1e-74
CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4           ( 147)  276 78.6 1.7e-15
CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5          ( 150)  255 73.2 7.2e-14


>>CCDS9337.1 ALOX5AP gene_id:241|Hs108|chr13              (161 aa)
 initn: 1046 init1: 1046 opt: 1046  Z-score: 1456.8  bits: 275.8 E(32554): 8e-75
Smith-Waterman score: 1046; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE1 MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIIL
               70        80        90       100       110       120

              130       140       150       160 
pF1KE1 FLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP
       :::::::::::::::::::::::::::::::::::::::::
CCDS93 FLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP
              130       140       150       160 

>>CCDS73558.1 ALOX5AP gene_id:241|Hs108|chr13             (218 aa)
 initn: 1046 init1: 1046 opt: 1046  Z-score: 1454.5  bits: 275.8 E(32554): 1.1e-74
Smith-Waterman score: 1046; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:58-218)

                                             10        20        30
pF1KE1                               MDQETVGNVVLLAIVTLISVVQNGFFAHKV
                                     ::::::::::::::::::::::::::::::
CCDS73 LGHIGNISHQCWAGCAAGGRAVLSGEPEANMDQETVGNVVLLAIVTLISVVQNGFFAHKV
        30        40        50        60        70        80       

               40        50        60        70        80        90
pF1KE1 EHESRTQNGRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVPAAFAGLMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EHESRTQNGRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVPAAFAGLMY
        90       100       110       120       130       140       

              100       110       120       130       140       150
pF1KE1 LFVRQKYFVGYLGERTQSTPGYIFGKRIILFLFLMSVAGIFNYYLIFFFGSDFENYIKTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LFVRQKYFVGYLGERTQSTPGYIFGKRIILFLFLMSVAGIFNYYLIFFFGSDFENYIKTI
       150       160       170       180       190       200       

              160 
pF1KE1 STTISPLLLIP
       :::::::::::
CCDS73 STTISPLLLIP
       210        

>>CCDS3749.1 MGST2 gene_id:4258|Hs108|chr4                (147 aa)
 initn: 288 init1: 276 opt: 276  Z-score: 391.7  bits: 78.6 E(32554): 1.7e-15
Smith-Waterman score: 276; 37.2% identity (62.8% similar) in 129 aa overlap (7-135:3-131)

               10        20        30        40        50        60
pF1KE1 MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC
             :: .::: :...:. :...:: .: .     .      ::.  ::::. :.:::
CCDS37     MAGNSILLAAVSILSACQQSYFALQVGKARLKYKVTPPAVTGSPEFERVFRAQQNC
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KE1 VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYLGERTQSTPGYIFGKRIIL
       :. :: :. .:: ::   .:: :.  ::.:.. :. :: ::     .   :. ..  :. 
CCDS37 VEFYPIFIITLWMAGWYFNQVFATCLGLVYIYGRHLYFWGYSEAAKKRITGFRLSLGILA
         60        70        80        90       100       110      

              130       140       150       160 
pF1KE1 FLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP
       .: :... :: : .:                          
CCDS37 LLTLLGALGIANSFLDEYLDLNIAKKLRRQF          
        120       130       140                 

>>CCDS34316.1 LTC4S gene_id:4056|Hs108|chr5               (150 aa)
 initn: 240 init1: 240 opt: 255  Z-score: 362.5  bits: 73.2 E(32554): 7.2e-14
Smith-Waterman score: 255; 36.7% identity (64.1% similar) in 128 aa overlap (9-135:5-131)

               10        20        30        40        50        60
pF1KE1 MDQETVGNVVLLAIVTLISVVQNGFFAHKVEHESRTQNGRSFQRTGTLAFERVYTANQNC
               :.::: :::..:. ...:. .:    :.        ::   ::::: :. ::
CCDS34     MKDEVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNC
                   10        20        30        40        50      

               70        80        90       100        110         
pF1KE1 VDAYPTFLAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFVGYL-GERTQSTPGYIFGKRII
        . .: :::.:: ::..  .  ::. ::.:::.: .:: ::  . . . .: :  . : .
CCDS34 SEYFPLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYA-SARAL
         60        70        80        90       100       110      

     120       130       140       150       160 
pF1KE1 LFLFLMSVAGIFNYYLIFFFGSDFENYIKTISTTISPLLLIP
        .:  ... :.. ..:                          
CCDS34 WLLVALAALGLLAHFLPAALRAALLGRLRTLLPWA       
         120       130       140       150       




161 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:38:35 2016 done: Sun Nov  6 14:38:35 2016
 Total Scan time:  1.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]