FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5824, 1092 aa 1>>>pF1KE5824 1092 - 1092 aa - 1092 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8575+/-0.000951; mu= 10.6819+/- 0.058 mean_var=124.0374+/-24.629, 0's: 0 Z-trim(109.8): 13 B-trim: 0 in 0/51 Lambda= 0.115159 statistics sampled from 11120 (11124) to 11120 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.342), width: 16 Scan time: 5.050 The best scores are: opt bits E(32554) CCDS9336.1 USPL1 gene_id:10208|Hs108|chr13 (1092) 7247 1215.7 0 CCDS81760.1 USPL1 gene_id:10208|Hs108|chr13 ( 763) 5041 849.1 0 >>CCDS9336.1 USPL1 gene_id:10208|Hs108|chr13 (1092 aa) initn: 7247 init1: 7247 opt: 7247 Z-score: 6506.4 bits: 1215.7 E(32554): 0 Smith-Waterman score: 7247; 99.8% identity (99.9% similar) in 1092 aa overlap (1-1092:1-1092) 10 20 30 40 50 60 pF1KE5 MMDSPKIGNGLPVIGPGTDIGISSLHMVGYLGKNFDSAKVPSDEYCPACREKGKLKALKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 MMDSPKIGNGLPVIGPGTDIGISSLHMVGYLGKNFDSAKVPSDEYCPACREKGKLKALKT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YRISFQESIFLCEDLQCIYPLGSKSLNNLISPDLEECHTPHKPQKRKSLESSYKDSLLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 YRISFQESIFLCEDLQCIYPLGSKSLNNLISPDLEECHTPHKPQKRKSLESSYKDSLLLA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NSKKTRNYIAIDGGKVLNSKHNGEVYDETSSNLPDSSGQQNPIRTADSLERNEILEADTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 NSKKTRNYIAIDGGKVLNSKHNGEVYDETSSNLPDSSGQQNPIRTADSLERNEILEADTV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 DMATTKDPATVDVSGTGRPSPQNEGCTSKLEMPLESKCTSFPQALCVQWKNAYALCWLDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 DMATTKDPATVDVSGTGRPSPQNEGCTSKLEMPLESKCTSFPQALCVQWKNAYALCWLDC 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 ILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTSQLSGVKDGDCKKLTSEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 ILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTSQLSGVKDGDCKKLTSEI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 FAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 FAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDFE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 CSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 CSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFML 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 HFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 HFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCSE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 RHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSSTSCSVGDAA :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: CCDS93 RHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSLTSCSVGDAA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 SAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 SAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVSQ 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE5 LNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 LNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVVN 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE5 TNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 TNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVTS 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE5 QVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 QVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHNR 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE5 NTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 NTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTAA 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE5 HPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 HPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAEK 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE5 KKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIANESACTTVPGV :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: CCDS93 KKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIASESACTTVPGV 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE5 SLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 SLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTHL 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE5 RQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 RQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTLD 1030 1040 1050 1060 1070 1080 1090 pF1KE5 LPHFDEYLFENY :::::::::::: CCDS93 LPHFDEYLFENY 1090 >>CCDS81760.1 USPL1 gene_id:10208|Hs108|chr13 (763 aa) initn: 5041 init1: 5041 opt: 5041 Z-score: 4528.2 bits: 849.1 E(32554): 0 Smith-Waterman score: 5041; 99.7% identity (99.9% similar) in 763 aa overlap (330-1092:1-763) 300 310 320 330 340 350 pF1KE5 IFAEIETCLNEVRDEIFISLQPQLRCTLGDMESPVFAFPLLLKLETHIEKLFLYSFSWDF :::::::::::::::::::::::::::::: CCDS81 MESPVFAFPLLLKLETHIEKLFLYSFSWDF 10 20 30 360 370 380 390 400 410 pF1KE5 ECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 ECSQCGHQYQNRHMKSLVTFTNVIPEWHPLNAAHFGPCNNCNSKSQIRKMVLEKVSPIFM 40 50 60 70 80 90 420 430 440 450 460 470 pF1KE5 LHFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 LHFVEGLPQNDLQHYAFHFEGCLYQITSVIQYRANNHFITWILDADGSWLECDDLKGPCS 100 110 120 130 140 150 480 490 500 510 520 530 pF1KE5 ERHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSSTSCSVGDA ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: CCDS81 ERHKKFEVPASEIHIVIWERKISQVTDKEAACLPLKKTNDQHALSNEKPVSLTSCSVGDA 160 170 180 190 200 210 540 550 560 570 580 590 pF1KE5 ASAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 ASAETASVTHPKDISVAPRTLSQDTAVTHGDHLLSGPKGLVDNILPLTLEETIQKTASVS 220 230 240 250 260 270 600 610 620 630 640 650 pF1KE5 QLNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 QLNSEAFLLENKPVAENTGILKTNTLLSQESLMASSVSAPCNEKLIQDQFVDISFPSQVV 280 290 300 310 320 330 660 670 680 690 700 710 pF1KE5 NTNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 NTNMQSVQLNTEDTVNTKSVNNTDATGLIQGVKSVEIEKDAQLKQFLTPKTEQLKPERVT 340 350 360 370 380 390 720 730 740 750 760 770 pF1KE5 SQVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 SQVSNLKKKETTADSQTTTSKSLQNQSLKENQKKPFVGSWVKGLISRGASFMPLCVSAHN 400 410 420 430 440 450 780 790 800 810 820 830 pF1KE5 RNTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 RNTITDLQPSVKGVNNFGGFKTKGINQKASHVSKKARKSASKPPPISKPPAGPPSSNGTA 460 470 480 490 500 510 840 850 860 870 880 890 pF1KE5 AHPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 AHPHAHAASEVLEKSGSTSCGAQLNHSSYGNGISSANHEDLVEGQIHKLRLKLRKKLKAE 520 530 540 550 560 570 900 910 920 930 940 950 pF1KE5 KKKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIANESACTTVPG ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: CCDS81 KKKLAALMSSPQSRTVRSENLEQVPQDGSPNDCESIEDLLNELPYPIDIASESACTTVPG 580 590 600 610 620 630 960 970 980 990 1000 1010 pF1KE5 VSLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 VSLYSSQTHEEILAELLSPTPVSTELSENGEGDFRYLGMGDSHIPPPVPSEFNDVSQNTH 640 650 660 670 680 690 1020 1030 1040 1050 1060 1070 pF1KE5 LRQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 LRQDHNYCSPTKKNPCEVQPDSLTNNACVRTLNLESPMKTDIFDEFFSSSALNALANDTL 700 710 720 730 740 750 1080 1090 pF1KE5 DLPHFDEYLFENY ::::::::::::: CCDS81 DLPHFDEYLFENY 760 1092 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:58:26 2016 done: Tue Nov 8 06:58:27 2016 Total Scan time: 5.050 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]