FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3060, 214 aa
  1>>>pF1KE3060 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4645+/-0.000772; mu= 12.2119+/- 0.046
 mean_var=56.3859+/-11.261, 0's: 0 Z-trim(106.8): 16  B-trim: 2 in 1/48
 Lambda= 0.170800
 statistics sampled from 9220 (9223) to 9220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS9293.1 EEF1AKMT1 gene_id:221143|Hs108|chr13    ( 214) 1439 362.5 1.1e-100


>>CCDS9293.1 EEF1AKMT1 gene_id:221143|Hs108|chr13         (214 aa)
 initn: 1439 init1: 1439 opt: 1439  Z-score: 1920.9  bits: 362.5 E(32554): 1.1e-100
Smith-Waterman score: 1439; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE3 MSDLEDDETPQLSAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MSDLEDDETPQLSAHALAALQEFYAEQKQQIEPGEDDKYNIGIIEENWQLSQFWYSQETA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LQLAQEAIAAVGEGGRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEFIFYDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LQLAQEAIAAVGEGGRIACVSAPSVYQKLRELCRENFSIYIFEYDKRFAMYGEEFIFYDY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 NNPLDLPERIAAHSFDIVIADPPYLSEECLRKTSETVKYLTRGKILLCTGAIMEEQAAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 NNPLDLPERIAAHSFDIVIADPPYLSEECLRKTSETVKYLTRGKILLCTGAIMEEQAAEL
              130       140       150       160       170       180

              190       200       210    
pF1KE3 LGVKMCTFVPRHTRNLANEFRCYVNYDSGLDCGI
       ::::::::::::::::::::::::::::::::::
CCDS92 LGVKMCTFVPRHTRNLANEFRCYVNYDSGLDCGI
              190       200       210    




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:01:57 2016 done: Sun Nov  6 06:01:57 2016
 Total Scan time:  2.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]