FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5133, 166 aa
  1>>>pF1KE5133 166 - 166 aa - 166 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6707+/-0.000629; mu= 12.2269+/- 0.038
 mean_var=89.6701+/-17.484, 0's: 0 Z-trim(113.6): 5  B-trim: 0 in 0/52
 Lambda= 0.135441
 statistics sampled from 14226 (14229) to 14226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.437), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS9244.1 C12orf65 gene_id:91574|Hs108|chr12      ( 166) 1108 225.2 1.4e-59


>>CCDS9244.1 C12orf65 gene_id:91574|Hs108|chr12           (166 aa)
 initn: 1108 init1: 1108 opt: 1108  Z-score: 1183.0  bits: 225.2 E(32554): 1.4e-59
Smith-Waterman score: 1108; 100.0% identity (100.0% similar) in 166 aa overlap (1-166:1-166)

               10        20        30        40        50        60
pF1KE5 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MSTVGLFHFPTPLTRICPAPWGLRLWEKLTLLSPGIAVTPVQMAGKKDYPALLSLDENEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 EEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY
               70        80        90       100       110       120

              130       140       150       160      
pF1KE5 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 NGENSPVHKEKREAAKKKQERKKRAKETLEKKKLLKELWESSKKVH
              130       140       150       160      




166 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:41:29 2016 done: Mon Nov  7 21:41:29 2016
 Total Scan time:  2.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]