FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1581, 89 aa 1>>>pF1KE1581 89 - 89 aa - 89 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9965+/-0.000336; mu= 10.1129+/- 0.021 mean_var=53.5214+/-10.640, 0's: 0 Z-trim(113.9): 5 B-trim: 0 in 0/49 Lambda= 0.175312 statistics sampled from 23518 (23523) to 23518 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.276), width: 16 Scan time: 3.830 The best scores are: opt bits E(85289) NP_001032583 (OMIM: 601562) dynein light chain 1, ( 89) 604 160.2 4.1e-40 NP_001032584 (OMIM: 601562) dynein light chain 1, ( 89) 604 160.2 4.1e-40 NP_003737 (OMIM: 601562) dynein light chain 1, cyt ( 89) 604 160.2 4.1e-40 NP_542408 (OMIM: 608942) dynein light chain 2, cyt ( 89) 568 151.1 2.3e-37 NP_005731 (OMIM: 610565,616059) dynein light chain ( 105) 213 61.3 2.8e-10 >>NP_001032583 (OMIM: 601562) dynein light chain 1, cyto (89 aa) initn: 604 init1: 604 opt: 604 Z-score: 841.2 bits: 160.2 E(85289): 4.1e-40 Smith-Waterman score: 604; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89) 10 20 30 40 50 60 pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 10 20 30 40 50 60 70 80 pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG ::::::::::::::::::::::::::::: NP_001 NFGSYVTHETKHFIYFYLGQVAILLFKSG 70 80 >>NP_001032584 (OMIM: 601562) dynein light chain 1, cyto (89 aa) initn: 604 init1: 604 opt: 604 Z-score: 841.2 bits: 160.2 E(85289): 4.1e-40 Smith-Waterman score: 604; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89) 10 20 30 40 50 60 pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 10 20 30 40 50 60 70 80 pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG ::::::::::::::::::::::::::::: NP_001 NFGSYVTHETKHFIYFYLGQVAILLFKSG 70 80 >>NP_003737 (OMIM: 601562) dynein light chain 1, cytopla (89 aa) initn: 604 init1: 604 opt: 604 Z-score: 841.2 bits: 160.2 E(85289): 4.1e-40 Smith-Waterman score: 604; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89) 10 20 30 40 50 60 pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 10 20 30 40 50 60 70 80 pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG ::::::::::::::::::::::::::::: NP_003 NFGSYVTHETKHFIYFYLGQVAILLFKSG 70 80 >>NP_542408 (OMIM: 608942) dynein light chain 2, cytopla (89 aa) initn: 568 init1: 568 opt: 568 Z-score: 792.0 bits: 151.1 E(85289): 2.3e-37 Smith-Waterman score: 568; 93.3% identity (98.9% similar) in 89 aa overlap (1-89:1-89) 10 20 30 40 50 60 pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR : :::::::::::::.::::.:.:::::.:::::::::::.::::::::::::::::::: NP_542 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 10 20 30 40 50 60 70 80 pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG ::::::::::::::::::::::::::::: NP_542 NFGSYVTHETKHFIYFYLGQVAILLFKSG 70 80 >>NP_005731 (OMIM: 610565,616059) dynein light chain 4, (105 aa) initn: 237 init1: 148 opt: 213 Z-score: 305.6 bits: 61.3 E(85289): 2.8e-10 Smith-Waterman score: 213; 36.1% identity (79.5% similar) in 83 aa overlap (7-87:21-103) 10 20 30 40 pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKE- .....:: :::. ...: . : ::.. ... ::.. :: NP_005 MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET 10 20 30 40 50 60 50 60 70 80 pF1KE1 FDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKSG .:::.. .:: ..:..:: .:::.:...:.:.: .:. ..: NP_005 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS 70 80 90 100 89 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:41:28 2016 done: Sun Nov 6 14:41:28 2016 Total Scan time: 3.830 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]