FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1581, 89 aa
  1>>>pF1KE1581 89 - 89 aa - 89 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9897+/-0.000739; mu= 10.0158+/- 0.044
 mean_var=52.3933+/-10.314, 0's: 0 Z-trim(106.7): 7  B-trim: 0 in 0/48
 Lambda= 0.177189
 statistics sampled from 9149 (9152) to 9149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.281), width:  16
 Scan time:  1.330

The best scores are:                                      opt bits E(32554)
CCDS9200.1 DYNLL1 gene_id:8655|Hs108|chr12         (  89)  604 161.7 5.3e-41
CCDS11601.1 DYNLL2 gene_id:140735|Hs108|chr17      (  89)  568 152.5 3.1e-38
CCDS13979.1 DNAL4 gene_id:10126|Hs108|chr22        ( 105)  213 61.8 7.5e-11


>>CCDS9200.1 DYNLL1 gene_id:8655|Hs108|chr12              (89 aa)
 initn: 604 init1: 604 opt: 604  Z-score: 849.6  bits: 161.7 E(32554): 5.3e-41
Smith-Waterman score: 604; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
CCDS92 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>CCDS11601.1 DYNLL2 gene_id:140735|Hs108|chr17           (89 aa)
 initn: 568 init1: 568 opt: 568  Z-score: 799.8  bits: 152.5 E(32554): 3.1e-38
Smith-Waterman score: 568; 93.3% identity (98.9% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR
       : :::::::::::::.::::.:.:::::.:::::::::::.:::::::::::::::::::
CCDS11 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR
               10        20        30        40        50        60

               70        80         
pF1KE1 NFGSYVTHETKHFIYFYLGQVAILLFKSG
       :::::::::::::::::::::::::::::
CCDS11 NFGSYVTHETKHFIYFYLGQVAILLFKSG
               70        80         

>>CCDS13979.1 DNAL4 gene_id:10126|Hs108|chr22             (105 aa)
 initn: 237 init1: 148 opt: 213  Z-score: 308.2  bits: 61.8 E(32554): 7.5e-11
Smith-Waterman score: 213; 36.1% identity (79.5% similar) in 83 aa overlap (7-87:21-103)

                             10        20        30        40      
pF1KE1               MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKE-
                           .....:: :::. ...:  . : ::.. ... ::.. :: 
CCDS13 MGETEGKKDEADYKRLQTFPLVRHSDMPEEMRVETMELCVTACEKFSNNNESAAKMIKET
               10        20        30        40        50        60

          50        60        70         80         
pF1KE1 FDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLG-QVAILLFKSG
       .:::.. .:: ..:..::  .:::.:...:.:.:  .:. ..:  
CCDS13 MDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFGGTLAVCVWKCS
               70        80        90       100     




89 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:41:27 2016 done: Sun Nov  6 14:41:27 2016
 Total Scan time:  1.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]