FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1727, 236 aa 1>>>pF1KE1727 236 - 236 aa - 236 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7782+/-0.000486; mu= -0.6591+/- 0.030 mean_var=259.9213+/-55.427, 0's: 0 Z-trim(116.0): 15 B-trim: 63 in 2/53 Lambda= 0.079552 statistics sampled from 26841 (26856) to 26841 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.315), width: 16 Scan time: 6.580 The best scores are: opt bits E(85289) NP_001171420 (OMIM: 270960,604759) synaptonemal co ( 236) 1494 184.3 1.6e-46 NP_001171419 (OMIM: 270960,604759) synaptonemal co ( 236) 1494 184.3 1.6e-46 NP_710161 (OMIM: 270960,604759) synaptonemal compl ( 236) 1494 184.3 1.6e-46 XP_016874857 (OMIM: 270960,604759) PREDICTED: syna ( 316) 1494 184.4 1.9e-46 XP_005268984 (OMIM: 270960,604759) PREDICTED: syna ( 242) 1406 174.2 1.8e-43 XP_005268983 (OMIM: 270960,604759) PREDICTED: syna ( 242) 1406 174.2 1.8e-43 XP_005268981 (OMIM: 270960,604759) PREDICTED: syna ( 242) 1406 174.2 1.8e-43 XP_005268982 (OMIM: 270960,604759) PREDICTED: syna ( 242) 1406 174.2 1.8e-43 XP_011536723 (OMIM: 270960,604759) PREDICTED: syna ( 296) 1406 174.3 2e-43 XP_005268979 (OMIM: 270960,604759) PREDICTED: syna ( 322) 1406 174.3 2.1e-43 NP_995321 (OMIM: 300478) protein FAM9B [Homo sapie ( 186) 260 42.6 0.00057 XP_011543766 (OMIM: 300478) PREDICTED: protein FAM ( 186) 260 42.6 0.00057 >>NP_001171420 (OMIM: 270960,604759) synaptonemal comple (236 aa) initn: 1494 init1: 1494 opt: 1494 Z-score: 956.3 bits: 184.3 E(85289): 1.6e-46 Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236) 10 20 30 40 50 60 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF 190 200 210 220 230 >>NP_001171419 (OMIM: 270960,604759) synaptonemal comple (236 aa) initn: 1494 init1: 1494 opt: 1494 Z-score: 956.3 bits: 184.3 E(85289): 1.6e-46 Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236) 10 20 30 40 50 60 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF 190 200 210 220 230 >>NP_710161 (OMIM: 270960,604759) synaptonemal complex p (236 aa) initn: 1494 init1: 1494 opt: 1494 Z-score: 956.3 bits: 184.3 E(85289): 1.6e-46 Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:1-236) 10 20 30 40 50 60 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_710 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_710 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_710 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_710 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF 190 200 210 220 230 >>XP_016874857 (OMIM: 270960,604759) PREDICTED: synapton (316 aa) initn: 1494 init1: 1494 opt: 1494 Z-score: 954.8 bits: 184.4 E(85289): 1.9e-46 Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 236 aa overlap (1-236:81-316) 10 20 30 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETE :::::::::::::::::::::::::::::: XP_016 ARLWRSCGGRLSTTSNWSSAIAVCFRKHLNMVSSGKKYSRKSGKPSVEDQFTRAYDFETE 60 70 80 90 100 110 40 50 60 70 80 90 pF1KE1 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK 120 130 140 150 160 170 100 110 120 130 140 150 pF1KE1 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI 180 190 200 210 220 230 160 170 180 190 200 210 pF1KE1 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM 240 250 260 270 280 290 220 230 pF1KE1 LQKKIMMETQQQEIASVRKSLQSMLF :::::::::::::::::::::::::: XP_016 LQKKIMMETQQQEIASVRKSLQSMLF 300 310 >>XP_005268984 (OMIM: 270960,604759) PREDICTED: synapton (242 aa) initn: 1488 init1: 1394 opt: 1406 Z-score: 901.6 bits: 174.2 E(85289): 1.8e-43 Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:1-238) 10 20 30 40 50 60 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMET--QQQEIASVRKSLQSMLF ::::::::::::::::::::::::::::::::::::::: .. :: ..: .... .: XP_005 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETVSDHIEIEKIRINISNEIFYL 190 200 210 220 230 240 XP_005 LK >>XP_005268983 (OMIM: 270960,604759) PREDICTED: synapton (242 aa) initn: 1488 init1: 1394 opt: 1406 Z-score: 901.6 bits: 174.2 E(85289): 1.8e-43 Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:1-238) 10 20 30 40 50 60 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMET--QQQEIASVRKSLQSMLF ::::::::::::::::::::::::::::::::::::::: .. :: ..: .... .: XP_005 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETVSDHIEIEKIRINISNEIFYL 190 200 210 220 230 240 XP_005 LK >>XP_005268981 (OMIM: 270960,604759) PREDICTED: synapton (242 aa) initn: 1488 init1: 1394 opt: 1406 Z-score: 901.6 bits: 174.2 E(85289): 1.8e-43 Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:1-238) 10 20 30 40 50 60 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMET--QQQEIASVRKSLQSMLF ::::::::::::::::::::::::::::::::::::::: .. :: ..: .... .: XP_005 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETVSDHIEIEKIRINISNEIFYL 190 200 210 220 230 240 XP_005 LK >>XP_005268982 (OMIM: 270960,604759) PREDICTED: synapton (242 aa) initn: 1488 init1: 1394 opt: 1406 Z-score: 901.6 bits: 174.2 E(85289): 1.8e-43 Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:1-238) 10 20 30 40 50 60 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMET--QQQEIASVRKSLQSMLF ::::::::::::::::::::::::::::::::::::::: .. :: ..: .... .: XP_005 QFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETVSDHIEIEKIRINISNEIFYL 190 200 210 220 230 240 XP_005 LK >>XP_011536723 (OMIM: 270960,604759) PREDICTED: synapton (296 aa) initn: 1488 init1: 1394 opt: 1406 Z-score: 900.5 bits: 174.3 E(85289): 2e-43 Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:55-292) 10 20 30 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETE :::::::::::::::::::::::::::::: XP_011 RRDWLFSCANPSLPQKRRGEGATSVRKHLNMVSSGKKYSRKSGKPSVEDQFTRAYDFETE 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE1 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE1 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI 150 160 170 180 190 200 160 170 180 190 200 210 pF1KE1 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM 210 220 230 240 250 260 220 230 pF1KE1 LQKKIMMET--QQQEIASVRKSLQSMLF ::::::::: .. :: ..: .... .: XP_011 LQKKIMMETVSDHIEIEKIRINISNEIFYLLK 270 280 290 >>XP_005268979 (OMIM: 270960,604759) PREDICTED: synapton (322 aa) initn: 1469 init1: 1394 opt: 1406 Z-score: 900.1 bits: 174.3 E(85289): 2.1e-43 Smith-Waterman score: 1406; 93.7% identity (97.5% similar) in 238 aa overlap (1-236:81-318) 10 20 30 pF1KE1 MVSSGKKYSRKSGKPSVEDQFTRAYDFETE :::::::::::::::::::::::::::::: XP_005 ARLWRSCGGRLSTTSNWSSAIAVCFRKHLNMVSSGKKYSRKSGKPSVEDQFTRAYDFETE 60 70 80 90 100 110 40 50 60 70 80 90 pF1KE1 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRK 120 130 140 150 160 170 100 110 120 130 140 150 pF1KE1 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKI 180 190 200 210 220 230 160 170 180 190 200 210 pF1KE1 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAM 240 250 260 270 280 290 220 230 pF1KE1 LQKKIMMET--QQQEIASVRKSLQSMLF ::::::::: .. :: ..: .... .: XP_005 LQKKIMMETVSDHIEIEKIRINISNEIFYLLK 300 310 320 236 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:44:34 2016 done: Sun Nov 6 14:44:35 2016 Total Scan time: 6.580 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]