FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5558, 381 aa
  1>>>pF1KE5558 381 - 381 aa - 381 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6191+/-0.000352; mu= 6.4711+/- 0.022
 mean_var=139.9847+/-27.972, 0's: 0 Z-trim(118.1): 16  B-trim: 137 in 1/56
 Lambda= 0.108401
 statistics sampled from 30772 (30788) to 30772 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.361), width:  16
 Scan time:  6.440

The best scores are:                                      opt bits E(85289)
NP_008974 (OMIM: 612817) KRR1 small subunit proces ( 381) 2454 395.1 1.4e-109


>>NP_008974 (OMIM: 612817) KRR1 small subunit processome  (381 aa)
 initn: 2454 init1: 2454 opt: 2454  Z-score: 2088.3  bits: 395.1 E(85289): 1.4e-109
Smith-Waterman score: 2454; 99.7% identity (99.7% similar) in 381 aa overlap (1-381:1-381)

               10        20        30        40        50        60
pF1KE5 MASPSLERPEKGAGKSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MASPSLERPEKGAGKSEFRNQKPKPENQDESELLTVPDGWKEPAFSKEDNPRGLLEESSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ATLFPKYRGAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLI
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 ATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 KLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 KLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 CYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 RFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELASGEYFLKANQKKRQKME
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 AIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEASTETKIDVASIKEKVKKAKNKKLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 AIKAKQAEAISKRQEERNKAFIPPKEKPIVKPKEASTETKIDVASIKEKVKKAKNKKLGA
              310       320       330       340       350       360

              370       380 
pF1KE5 LTAEEIALKMEADEKKKKKKK
       :::::::::::::::::::::
NP_008 LTAEEIALKMEADEKKKKKKK
              370       380 




381 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:48:54 2016 done: Tue Nov  8 01:48:55 2016
 Total Scan time:  6.440 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]