FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6516, 185 aa 1>>>pF1KE6516 185 - 185 aa - 185 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2480+/-0.000295; mu= 14.0622+/- 0.018 mean_var=68.7144+/-13.939, 0's: 0 Z-trim(118.3): 29 B-trim: 0 in 0/54 Lambda= 0.154721 statistics sampled from 31062 (31091) to 31062 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.365), width: 16 Scan time: 5.740 The best scores are: opt bits E(85289) NP_001180389 (OMIM: 613718,613719) methionine-R-su ( 185) 1277 293.1 1.7e-79 NP_001026849 (OMIM: 613718,613719) methionine-R-su ( 185) 1277 293.1 1.7e-79 NP_001180390 (OMIM: 613718,613719) methionine-R-su ( 185) 1277 293.1 1.7e-79 NP_932346 (OMIM: 613718,613719) methionine-R-sulfo ( 192) 1119 257.9 7.1e-69 NP_036360 (OMIM: 613782) methionine-R-sulfoxide re ( 182) 466 112.1 5.1e-25 NP_057416 (OMIM: 606216) methionine-R-sulfoxide re ( 116) 289 72.5 2.8e-13 XP_011517728 (OMIM: 613782) PREDICTED: methionine- ( 141) 207 54.2 1.1e-07 >>NP_001180389 (OMIM: 613718,613719) methionine-R-sulfox (185 aa) initn: 1277 init1: 1277 opt: 1277 Z-score: 1548.4 bits: 293.1 E(85289): 1.7e-79 Smith-Waterman score: 1277; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185) 10 20 30 40 50 60 pF1KE6 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQA 130 140 150 160 170 180 pF1KE6 DKAEL ::::: NP_001 DKAEL >>NP_001026849 (OMIM: 613718,613719) methionine-R-sulfox (185 aa) initn: 1277 init1: 1277 opt: 1277 Z-score: 1548.4 bits: 293.1 E(85289): 1.7e-79 Smith-Waterman score: 1277; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185) 10 20 30 40 50 60 pF1KE6 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQA 130 140 150 160 170 180 pF1KE6 DKAEL ::::: NP_001 DKAEL >>NP_001180390 (OMIM: 613718,613719) methionine-R-sulfox (185 aa) initn: 1277 init1: 1277 opt: 1277 Z-score: 1548.4 bits: 293.1 E(85289): 1.7e-79 Smith-Waterman score: 1277; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185) 10 20 30 40 50 60 pF1KE6 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQA 130 140 150 160 170 180 pF1KE6 DKAEL ::::: NP_001 DKAEL >>NP_932346 (OMIM: 613718,613719) methionine-R-sulfoxide (192 aa) initn: 1119 init1: 1119 opt: 1119 Z-score: 1357.5 bits: 257.9 E(85289): 7.1e-69 Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 161 aa overlap (25-185:32-192) 10 20 30 40 50 pF1KE6 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHV :::::::::::::::::::::::::::::: NP_932 SPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHV 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 TQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_932 TQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE6 DDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_932 DDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGV 130 140 150 160 170 180 180 pF1KE6 ASPAQADKAEL ::::::::::: NP_932 ASPAQADKAEL 190 >>NP_036360 (OMIM: 613782) methionine-R-sulfoxide reduct (182 aa) initn: 454 init1: 247 opt: 466 Z-score: 570.1 bits: 112.1 E(85289): 5.1e-25 Smith-Waterman score: 466; 49.6% identity (74.1% similar) in 135 aa overlap (34-161:45-179) 10 20 30 40 50 60 pF1KE6 FNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESA :.. ....: .:.::: :..::.::::: NP_036 TAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTPEQFYVTREKGTEPP 20 30 40 50 60 70 70 80 90 100 110 pF1KE6 FEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSF---HDVINSE----AITFTDD : : : ..:. :.:.:: : .:::.:: :. ::.::::: : . .:. .: : NP_036 FSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLD 80 90 100 110 120 130 120 130 140 150 160 170 pF1KE6 FSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVAS : : :.:. :.:: :::::.: ::: :.:.:.::::.::.: : NP_036 TSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH 140 150 160 170 180 180 pF1KE6 PAQADKAEL >>NP_057416 (OMIM: 606216) methionine-R-sulfoxide reduct (116 aa) initn: 242 init1: 191 opt: 289 Z-score: 359.4 bits: 72.5 E(85289): 2.8e-13 Smith-Waterman score: 289; 36.6% identity (70.5% similar) in 112 aa overlap (62-171:5-115) 40 50 60 70 80 90 pF1KE6 KNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGE-YTHHKDPGIYKCVVCGTPLFKSE : : :: . .: .::.: :. :: ::.:. NP_057 MSFCSFFGGEVFQNHFEPGVYVCAKCGYELFSSR 10 20 30 100 110 120 130 140 pF1KE6 TKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF-DDGPRPTGKR .:. .: ::.: ..:...... . . . . ...::..:: ::: : .:::.: .: NP_057 SKYAHSSPWPAFTETIHADSVAKRPEHNRS-EALKVSCGKCGNGLGHEFLNDGPKPGQSR 40 50 60 70 80 90 150 160 170 180 pF1KE6 YCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL .:: :..:.:.: . .: : NP_057 FCIFSSSLKFVPKGKETSASQGH 100 110 >>XP_011517728 (OMIM: 613782) PREDICTED: methionine-R-su (141 aa) initn: 177 init1: 177 opt: 207 Z-score: 259.3 bits: 54.2 E(85289): 1.1e-07 Smith-Waterman score: 207; 48.2% identity (80.4% similar) in 56 aa overlap (34-89:45-100) 10 20 30 40 50 60 pF1KE6 FNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESA :.. ....: .:.::: :..::.::::: XP_011 TAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTPEQFYVTREKGTEPP 20 30 40 50 60 70 70 80 90 100 110 120 pF1KE6 FEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHR : : : ..:. :.:.:: : .:::.: XP_011 FSGIYLNNKEAGMYHCVCCDSPLFRSLLDIQKEVFSIKGSRSPSTSRGNGFDSEGAVRTI 80 90 100 110 120 130 185 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:01:02 2016 done: Tue Nov 8 14:01:02 2016 Total Scan time: 5.740 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]