FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6516, 185 aa
  1>>>pF1KE6516 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9852+/-0.000614; mu= 9.8404+/- 0.037
 mean_var=67.4153+/-13.629, 0's: 0 Z-trim(111.8): 9  B-trim: 0 in 0/52
 Lambda= 0.156205
 statistics sampled from 12674 (12681) to 12674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.39), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS31853.1 MSRB3 gene_id:253827|Hs108|chr12       ( 185) 1277 295.8   1e-80
CCDS8973.1 MSRB3 gene_id:253827|Hs108|chr12        ( 192) 1119 260.2 5.5e-70
CCDS41495.1 MSRB2 gene_id:22921|Hs108|chr10        ( 182)  466 113.0   1e-25
CCDS42100.1 MSRB1 gene_id:51734|Hs108|chr16        ( 116)  289 73.1   7e-14


>>CCDS31853.1 MSRB3 gene_id:253827|Hs108|chr12            (185 aa)
 initn: 1277 init1: 1277 opt: 1277  Z-score: 1562.6  bits: 295.8 E(32554): 1e-80
Smith-Waterman score: 1277; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KE6 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVASPAQA
              130       140       150       160       170       180

            
pF1KE6 DKAEL
       :::::
CCDS31 DKAEL
            

>>CCDS8973.1 MSRB3 gene_id:253827|Hs108|chr12             (192 aa)
 initn: 1119 init1: 1119 opt: 1119  Z-score: 1369.9  bits: 260.2 E(32554): 5.5e-70
Smith-Waterman score: 1119; 100.0% identity (100.0% similar) in 161 aa overlap (25-185:32-192)

                     10        20        30        40        50    
pF1KE6       MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHV
                                     ::::::::::::::::::::::::::::::
CCDS89 SPRRTLPRPLSLCLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHV
              10        20        30        40        50        60 

           60        70        80        90       100       110    
pF1KE6 TQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFT
              70        80        90       100       110       120 

          120       130       140       150       160       170    
pF1KE6 DDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGV
             130       140       150       160       170       180 

          180     
pF1KE6 ASPAQADKAEL
       :::::::::::
CCDS89 ASPAQADKAEL
             190  

>>CCDS41495.1 MSRB2 gene_id:22921|Hs108|chr10             (182 aa)
 initn: 454 init1: 247 opt: 466  Z-score: 575.0  bits: 113.0 E(32554): 1e-25
Smith-Waterman score: 466; 49.6% identity (74.1% similar) in 135 aa overlap (34-161:45-179)

            10        20        30        40        50        60   
pF1KE6 FNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESA
                                     :.. ....: .:.::: :..::.:::::  
CCDS41 TAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTPEQFYVTREKGTEPP
           20        30        40        50        60        70    

            70        80        90       100              110      
pF1KE6 FEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSF---HDVINSE----AITFTDD
       : : : ..:. :.:.:: : .:::.:: :. ::.:::::   : . .:.    .:    :
CCDS41 FSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLD
           80        90       100       110       120       130    

        120       130       140       150       160       170      
pF1KE6 FSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGTAEGGSGVAS
        : :  :.:. :.:: :::::.: ::: :.:.:.::::.::.: :               
CCDS41 TSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH            
          140       150       160       170       180              

        180     
pF1KE6 PAQADKAEL

>>CCDS42100.1 MSRB1 gene_id:51734|Hs108|chr16             (116 aa)
 initn: 242 init1: 191 opt: 289  Z-score: 362.7  bits: 73.1 E(32554): 7e-14
Smith-Waterman score: 289; 36.6% identity (70.5% similar) in 112 aa overlap (62-171:5-115)

              40        50        60         70        80        90
pF1KE6 KNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGE-YTHHKDPGIYKCVVCGTPLFKSE
                                     : : :: . .: .::.: :. ::  ::.:.
CCDS42                           MSFCSFFGGEVFQNHFEPGVYVCAKCGYELFSSR
                                         10        20        30    

              100       110       120       130        140         
pF1KE6 TKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF-DDGPRPTGKR
       .:.  .: ::.: ..:......   . . . . ...::..::  ::: : .:::.:  .:
CCDS42 SKYAHSSPWPAFTETIHADSVAKRPEHNRS-EALKVSCGKCGNGLGHEFLNDGPKPGQSR
           40        50        60         70        80        90   

     150       160       170       180     
pF1KE6 YCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL
       .:: :..:.:.:  .  .:  :              
CCDS42 FCIFSSSLKFVPKGKETSASQGH             
           100       110                   




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:01:01 2016 done: Tue Nov  8 14:01:01 2016
 Total Scan time:  1.870 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]