FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8542, 900 aa 1>>>pF1KB8542 900 - 900 aa - 900 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0066+/-0.000366; mu= 18.2370+/- 0.023 mean_var=93.0297+/-18.942, 0's: 0 Z-trim(115.3): 44 B-trim: 0 in 0/55 Lambda= 0.132973 statistics sampled from 25622 (25664) to 25622 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.301), width: 16 Scan time: 14.050 The best scores are: opt bits E(85289) NP_004981 (OMIM: 156560,615486,616280) methionine- ( 900) 6092 1179.5 0 XP_006719461 (OMIM: 156560,615486,616280) PREDICTE ( 666) 4530 879.8 0 NP_612404 (OMIM: 609728,611390,616430) methionine- ( 593) 205 50.1 3.9e-05 >>NP_004981 (OMIM: 156560,615486,616280) methionine--tRN (900 aa) initn: 6092 init1: 6092 opt: 6092 Z-score: 6314.2 bits: 1179.5 E(85289): 0 Smith-Waterman score: 6092; 100.0% identity (100.0% similar) in 900 aa overlap (1-900:1-900) 10 20 30 40 50 60 pF1KB8 MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 STSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 STSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 PCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAW 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 EKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 EKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 RQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 QQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 QQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 CGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 CGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 ITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 ITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWW 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 KNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB8 GVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMF 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB8 VSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQ 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB8 VNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSI 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB8 LLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQ 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB8 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK 850 860 870 880 890 900 >>XP_006719461 (OMIM: 156560,615486,616280) PREDICTED: m (666 aa) initn: 4530 init1: 4530 opt: 4530 Z-score: 4696.6 bits: 879.8 E(85289): 0 Smith-Waterman score: 4530; 100.0% identity (100.0% similar) in 666 aa overlap (235-900:1-666) 210 220 230 240 250 260 pF1KB8 QPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAWEKGLESLPPLRPQQNPVLPVAGER :::::::::::::::::::::::::::::: XP_006 MAVTAWEKGLESLPPLRPQQNPVLPVAGER 10 20 30 270 280 290 300 310 320 pF1KB8 NVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETKALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 NVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETKALE 40 50 60 70 80 90 330 340 350 360 370 380 pF1KB8 EGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQDTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 EGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQDTV 100 110 120 130 140 150 390 400 410 420 430 440 pF1KB8 EQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQCKVCRSCPVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 EQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQCKVCRSCPVV 160 170 180 190 200 210 450 460 470 480 490 500 pF1KB8 QSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFITRSWLRDGLKPRCITRDLKWGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 QSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFITRSWLRDGLKPRCITRDLKWGTP 220 230 240 250 260 270 510 520 530 540 550 560 pF1KB8 VPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPFHSLVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPFHSLVF 280 290 300 310 320 330 570 580 590 600 610 620 pF1KB8 PCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRFYLLYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRFYLLYI 340 350 360 370 380 390 630 640 650 660 670 680 pF1KB8 RPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVSKFFGGYVPEMVLTPDDQRLLAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVSKFFGGYVPEMVLTPDDQRLLAH 400 410 420 430 440 450 690 700 710 720 730 740 pF1KB8 VTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSEADRQRAGTVTGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSEADRQRAGTVTGL 460 470 480 490 500 510 750 760 770 780 790 800 pF1KB8 AVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILLTNFLCTLPAGHQIGTVSPLFQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 AVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILLTNFLCTLPAGHQIGTVSPLFQK 520 530 540 550 560 570 810 820 830 840 850 860 pF1KB8 LENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQQIQALMDEVTKQGNIVRELKAQKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQQIQALMDEVTKQGNIVRELKAQKA 580 590 600 610 620 630 870 880 890 900 pF1KB8 DKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK :::::::::::::::::::::::::::::::::::: XP_006 DKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK 640 650 660 >>NP_612404 (OMIM: 609728,611390,616430) methionine--tRN (593 aa) initn: 445 init1: 137 opt: 205 Z-score: 213.2 bits: 50.1 E(85289): 3.9e-05 Smith-Waterman score: 493; 24.8% identity (51.7% similar) in 572 aa overlap (269-809:48-584) 240 250 260 270 280 290 pF1KB8 AWEKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYS :. . ::: .::.:.. . .: ::.. :. NP_612 LSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHIGHLYSALL-ADALCRHR 20 30 40 50 60 70 300 310 320 330 340 350 pF1KB8 RLRQWNTL---YLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFG ::: .: . ::::.: . : ::.: :.::. .... .:: : NP_612 RLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQFQQLFQEAGISCTDFI 80 90 100 110 120 130 360 370 380 390 400 410 pF1KB8 RTTTPQQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARG ::: .. .: .. : .::.. . . : : :: : . : NP_612 RTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFL---------PEAKVTQQPG 140 150 160 170 180 420 430 440 450 460 470 pF1KB8 DQCDKCGKLINAVELKKPQCKVCRSCPVVQSSQHLFL-DLPKLEKRLEEWLGRTLPGSDW . :. : :.. . :: .... .. : ...: :..:: : : . NP_612 PSGDSF-----PVSLESGH-------PVSWTKEENYIFRLSQFRKPLQRWL-RGNPQA-I 190 200 210 220 230 480 490 500 510 520 530 pF1KB8 TPNA-QFITRSWLRDGLKPRCITR---DLKWGTPVPLEGFEDKVFYVWFDATIGYLSITA ::. . .. .:: . : ..: :.:: ::: : .....:::.:: ..::.. . NP_612 TPEPFHHVVLQWLDEELPDLSVSRRSSHLHWGIPVP--GDDSQTIYVWLDALVNYLTVIG 240 250 260 270 280 290 540 550 560 570 580 590 pF1KB8 NYTDQWERWWKNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYE . ... :: .. ..:: . ::.. .: ::: ... ... . . . NP_612 YPNAEFKSWWPATSHI-----IGKDILKFHAIYWPAFLLGA--GMSPPQRICVHSHWTVC 300 310 320 330 340 600 610 620 630 640 650 pF1KB8 DGKFSKSRGVGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNL :.::: : .: . . .: .:..:: . : . .. :::: . : NP_612 GQKMSKSLG-NVVDPRTCLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADAL 350 360 370 380 390 400 660 670 680 690 pF1KB8 GNFINRAGM-----------FVSKFFG---GYV-PEMVLTPDDQRLLAHVTLELQHYHQL :...:: : . : : : : . .: :.. :. .. . NP_612 GGLLNRCTAKRINPSETYPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADH 410 420 430 440 450 460 700 710 720 730 740 750 pF1KB8 LEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVM .. :: ::... . :. : ..: . ::: : .: ::: .:.. ..... NP_612 YDNFRIYKALEAVSSCVRQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTL 470 480 490 500 510 520 760 770 780 790 800 pF1KB8 LQPYMPTVSATIQAQLQLPPPACSILLTNFL-------CTLPAGHQIGTVSPL-FQKLEN ::: :... . ..: . :. :: : . :...: . : : .:.. NP_612 LQPVTPSLADKLLSRLGVSASERSLGELYFLPRFYGHPCPFE-GRRLGPETGLLFPRLDQ 530 540 550 560 570 580 810 820 830 840 850 860 pF1KB8 DQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQQIQALMDEVTKQGNIVRELKAQKADKN .. NP_612 SRTWLVKAHRT 590 900 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:48:21 2016 done: Sun Nov 6 14:48:23 2016 Total Scan time: 14.050 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]