FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8542, 900 aa 1>>>pF1KB8542 900 - 900 aa - 900 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3472+/-0.000916; mu= 16.3636+/- 0.055 mean_var=92.8078+/-18.640, 0's: 0 Z-trim(108.1): 28 B-trim: 0 in 0/51 Lambda= 0.133132 statistics sampled from 9963 (9985) to 9963 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.307), width: 16 Scan time: 4.330 The best scores are: opt bits E(32554) CCDS8942.1 MARS gene_id:4141|Hs108|chr12 ( 900) 6092 1180.8 0 >>CCDS8942.1 MARS gene_id:4141|Hs108|chr12 (900 aa) initn: 6092 init1: 6092 opt: 6092 Z-score: 6321.1 bits: 1180.8 E(32554): 0 Smith-Waterman score: 6092; 100.0% identity (100.0% similar) in 900 aa overlap (1-900:1-900) 10 20 30 40 50 60 pF1KB8 MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 STSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 STSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 PCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 PCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAW 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 EKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 EKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 RQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 RQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 QQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 QQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 CGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 CGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 ITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 ITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWW 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 KNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 KNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB8 GVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 GVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMF 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB8 VSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 VSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQ 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB8 VNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 VNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSI 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB8 LLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 LLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQ 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB8 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS89 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK 850 860 870 880 890 900 900 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:48:20 2016 done: Sun Nov 6 14:48:21 2016 Total Scan time: 4.330 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]