FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0233, 407 aa 1>>>pF1KE0233 407 - 407 aa - 407 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0758+/-0.000692; mu= 15.7126+/- 0.042 mean_var=114.2361+/-22.742, 0's: 0 Z-trim(113.9): 37 B-trim: 0 in 0/50 Lambda= 0.119998 statistics sampled from 14493 (14530) to 14493 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.446), width: 16 Scan time: 3.420 The best scores are: opt bits E(32554) CCDS8891.1 GDF11 gene_id:10220|Hs108|chr12 ( 407) 2825 499.4 2.6e-141 CCDS2303.1 MSTN gene_id:2660|Hs108|chr2 ( 375) 1383 249.7 3.4e-66 >>CCDS8891.1 GDF11 gene_id:10220|Hs108|chr12 (407 aa) initn: 2825 init1: 2825 opt: 2825 Z-score: 2650.6 bits: 499.4 E(32554): 2.6e-141 Smith-Waterman score: 2825; 100.0% identity (100.0% similar) in 407 aa overlap (1-407:1-407) 10 20 30 40 50 60 pF1KE0 MVLAAPLLLGFLLLALELRPRGEAAEGPAAAAAAAAAAAAAGVGGERSSRPAPSVAPEPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 MVLAAPLLLGFLLLALELRPRGEAAEGPAAAAAAAAAAAAAGVGGERSSRPAPSVAPEPD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 GCPVCVWRQHSRELRLESIKSQILSKLRLKEAPNISREVVKQLLPKAPPLQQILDLHDFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 GCPVCVWRQHSRELRLESIKSQILSKLRLKEAPNISREVVKQLLPKAPPLQQILDLHDFQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 GDALQPEDFLEEDEYHATTETVISMAQETDPAVQTDGSPLCCHFHFSPKVMFTKVLKAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 GDALQPEDFLEEDEYHATTETVISMAQETDPAVQTDGSPLCCHFHFSPKVMFTKVLKAQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 WVYLRPVPRPATVYLQILRLKPLTGEGTAGGGGGGRRHIRIRSLKIELHSRSGHWQSIDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 WVYLRPVPRPATVYLQILRLKPLTGEGTAGGGGGGRRHIRIRSLKIELHSRSGHWQSIDF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 KQVLHSWFRQPQSNWGIEINAFDPSGTDLAVTSLGPGAEGLHPFMELRVLENTKRSRRNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 KQVLHSWFRQPQSNWGIEINAFDPSGTDLAVTSLGPGAEGLHPFMELRVLENTKRSRRNL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 GLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 GLDCDEHSSESRCCRYPLTVDFEAFGWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQ 310 320 330 340 350 360 370 380 390 400 pF1KE0 QANPRGSAGPCCTPTKMSPINMLYFNDKQQIIYGKIPGMVVDRCGCS ::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 QANPRGSAGPCCTPTKMSPINMLYFNDKQQIIYGKIPGMVVDRCGCS 370 380 390 400 >>CCDS2303.1 MSTN gene_id:2660|Hs108|chr2 (375 aa) initn: 1349 init1: 1088 opt: 1383 Z-score: 1301.9 bits: 249.7 E(32554): 3.4e-66 Smith-Waterman score: 1645; 65.1% identity (84.9% similar) in 352 aa overlap (58-407:34-375) 30 40 50 60 70 80 pF1KE0 PAAAAAAAAAAAAAGVGGERSSRPAPSVAPEPDG-CPVCVWRQHSRELRLESIKSQILSK : .: : .:.:::... :.:.:: ::::: CCDS23 LQLCVYIYLFMLIVAGPVDLNENSEQKENVEKEGLCNACTWRQNTKSSRIEAIKIQILSK 10 20 30 40 50 60 90 100 110 120 130 140 pF1KE0 LRLKEAPNISREVVKQLLPKAPPLQQILDLHDFQGDALQPEDFLEEDEYHATTETVISMA :::. :::::..:..:::::::::....: .: : : . . ::.:.:::::::.:.: CCDS23 LRLETAPNISKDVIRQLLPKAPPLRELIDQYDVQRDD-SSDGSLEDDDYHATTETIITMP 70 80 90 100 110 120 150 160 170 180 190 200 pF1KE0 QETDPAVQTDGSPLCCHFHFSPKVMFTKVLKAQLWVYLRPVPRPATVYLQILRL-KPLTG :.: .:.::.: :: :.:: :....::.:::::.::::: :.::..::::: ::. CCDS23 TESDFLMQVDGKPKCCFFKFSSKIQYNKVVKAQLWIYLRPVETPTTVFVQILRLIKPMKD 130 140 150 160 170 180 210 220 230 240 250 260 pF1KE0 EGTAGGGGGGRRHIRIRSLKIELHSRSGHWQSIDFKQVLHSWFRQPQSNWGIEINAFDPS : :. :::::.... .: ::::: : ::..:..::.:: ::::.:.: . CCDS23 ---------GTRYTGIRSLKLDMNPGTGIWQSIDVKTVLQNWLKQPESNLGIEIKALDEN 190 200 210 220 230 270 280 290 300 310 320 pF1KE0 GTDLAVTSLGPGAEGLHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCRYPLTVDFEAF : ::::: ::: .::.::.:..: .. :::::..::::::::.:::::::::::::::: CCDS23 GHDLAVTFPGPGEDGLNPFLEVKVTDTPKRSRRDFGLDCDEHSTESRCCRYPLTVDFEAF 240 250 260 270 280 290 330 340 350 360 370 380 pF1KE0 GWDWIIAPKRYKANYCSGQCEYMFMQKYPHTHLVQQANPRGSAGPCCTPTKMSPINMLYF ::::::::::::::::::.::..:.:::::::::.::::::::::::::::::::::::: CCDS23 GWDWIIAPKRYKANYCSGECEFVFLQKYPHTHLVHQANPRGSAGPCCTPTKMSPINMLYF 300 310 320 330 340 350 390 400 pF1KE0 NDKQQIIYGKIPGMVVDRCGCS : :.::::::::.::::::::: CCDS23 NGKEQIIYGKIPAMVVDRCGCS 360 370 407 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:30:00 2016 done: Tue Nov 8 01:30:01 2016 Total Scan time: 3.420 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]