FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8944, 304 aa 1>>>pF1KB8944 304 - 304 aa - 304 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7795+/-0.000319; mu= 12.2131+/- 0.020 mean_var=191.3683+/-38.715, 0's: 0 Z-trim(122.3): 208 B-trim: 31 in 1/56 Lambda= 0.092713 statistics sampled from 40022 (40263) to 40022 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.472), width: 16 Scan time: 8.730 The best scores are: opt bits E(85289) NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 2095 291.8 1.1e-78 NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 643 97.7 3.5e-20 NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 518 80.9 3.6e-15 NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 378 62.2 1.7e-09 NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 362 60.2 8.2e-09 NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 335 56.3 7.5e-08 NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 333 56.1 9.3e-08 NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 334 56.3 9.7e-08 NP_776272 (OMIM: 142975) homeobox protein Hox-C12 ( 282) 330 55.7 1.3e-07 NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 330 55.8 1.4e-07 NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 309 52.8 8.2e-07 XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06 XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06 XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06 NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 295 51.2 4.2e-06 XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06 XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06 XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06 XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 295 51.2 4.2e-06 NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 283 49.5 1.1e-05 NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388) 282 49.4 1.3e-05 XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 278 48.6 1.3e-05 NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 278 48.6 1.3e-05 XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 278 48.6 1.3e-05 XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 278 48.7 1.6e-05 NP_067016 (OMIM: 142988) homeobox protein Hox-D12 ( 270) 276 48.4 1.8e-05 NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 276 48.5 1.9e-05 NP_059106 (OMIM: 142976,614931) homeobox protein H ( 330) 277 48.7 1.9e-05 NP_000514 (OMIM: 113200,113300,142989,186000,18630 ( 343) 274 48.3 2.6e-05 NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 270 47.6 3e-05 NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 266 47.0 4.2e-05 NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 268 47.5 4.3e-05 NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 264 46.8 5.4e-05 NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 262 46.6 7e-05 NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 262 46.6 7.2e-05 NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 260 46.3 8.4e-05 NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 259 46.2 9.4e-05 NP_006352 (OMIM: 604607) homeobox protein Hox-B13 ( 284) 256 45.8 0.00012 NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 249 44.3 0.00012 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 257 46.2 0.00014 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 257 46.2 0.00014 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 257 46.2 0.00014 NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 254 45.6 0.00015 NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 253 45.5 0.00019 NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 247 44.6 0.00027 NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 246 44.4 0.00029 >>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa) initn: 2095 init1: 2095 opt: 2095 Z-score: 1533.4 bits: 291.8 E(85289): 1.1e-78 Smith-Waterman score: 2095; 99.7% identity (99.7% similar) in 304 aa overlap (1-304:1-304) 10 20 30 40 50 60 pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVFSFLPQAPSRQIS ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: NP_055 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_055 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG 250 260 270 280 290 300 pF1KB8 NPLL :::: NP_055 NPLL >>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa) initn: 833 init1: 466 opt: 643 Z-score: 483.3 bits: 97.7 E(85289): 3.5e-20 Smith-Waterman score: 792; 44.5% identity (66.1% similar) in 339 aa overlap (21-304:3-338) 10 20 30 40 50 pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYM-P-EFSTVFSFLPQAPSRQ :: : :. :...:::.:.::. : .:.. ::: : : : NP_067 MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQ 10 20 30 40 60 70 80 pF1KB8 ISYPYSA----QVPPVREVS---YGLEPSGKWHHRNS----------------------- ...:::. .: :::::. :::: .:: .:.. NP_067 MTFPYSSNLAPHVQPVREVAFRDYGLE-RAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAG 50 60 70 80 90 100 90 100 110 120 130 pF1KB8 -YSSCYAAA-----------DELMHRECLPPS-TVTEILMKN-EGSYGGHHHPSAPHATP :. :::: . :.:: :::. ..:.: : .. : .: .. NP_067 GYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAA 110 120 130 140 150 160 140 150 160 170 180 pF1KB8 AGFYSSVNKNSVLPQAFDRFFDNA----YCGGGDPPAEPPCSGKGEA-KGEPEAPPASGL ..:::.:..:..:::.::.:.. : . : :: : . .: : ::.:.. ..: NP_067 SNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGG 170 180 190 200 210 220 190 200 210 220 230 240 pF1KB8 AS---RAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGA-APNAPRTRKKRCPYSKFQIR .: .: :.: .. :... .. : .. : ...: ::. :.:::::::.:.::: NP_067 GSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQ--RSRKKRCPYTKYQIR 230 240 250 260 270 250 260 270 280 290 300 pF1KB8 ELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL :::::::::::::::::::::::::::::::::::::::::::::.:::::::.::::. NP_067 ELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF 280 290 300 310 320 330 >>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A (313 aa) initn: 766 init1: 480 opt: 518 Z-score: 393.3 bits: 80.9 E(85289): 3.6e-15 Smith-Waterman score: 956; 52.2% identity (73.0% similar) in 318 aa overlap (21-304:2-313) 10 20 30 40 50 pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYM--PEFSTVFSFLPQAPS-R :: ::: :.::.::::::::. :.::.. :::::.:: : NP_005 MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSR 10 20 30 40 60 70 80 90 100 110 pF1KB8 QISYPYSAQVP---PVREVS---YGLEPSGKWHHRNSYSSCYAAADELMHRECLP-PSTV ..: ::...: :::::. :..::. ::: :.. . ::.: .::.::.:: ::.. NP_005 PMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSA-EELVHRDCLQAPSAA 50 60 70 80 90 100 120 130 140 150 160 pF1KB8 T---EILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPA ..: :. .. .:::. : :. ..:::.:..:.:::::::.::..:: : . : NP_005 GVPGDVLAKSSANV--YHHPT-P-AVSSNFYSTVGRNGVLPQAFDQFFETAY-GTPENLA 110 120 130 140 150 170 180 190 200 pF1KB8 EPPCSG-KGEAKGEPEAPPASGLASRAEAGAEA-------------------EAEEENTN : :. :: : : .:. :. : .:: : : .:. NP_005 SSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRR 160 170 180 190 200 210 210 220 230 240 250 260 pF1KB8 PSSSGSAHSVAKEPA-KGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLS : ::.: .: . . :... .. :::::::::.:.:::::::::::.:::::::::::: NP_005 PESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLS 220 230 240 250 260 270 270 280 290 300 pF1KB8 RMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL :::::::::::::::::::::::..::::::.:.:::: NP_005 RMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL 280 290 300 310 >>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom (342 aa) initn: 361 init1: 306 opt: 378 Z-score: 291.7 bits: 62.2 E(85289): 1.7e-09 Smith-Waterman score: 378; 32.7% identity (57.2% similar) in 318 aa overlap (2-301:39-338) 10 20 30 pF1KB8 MFN-SVNLGNFCSPSRKERGADFGERGSCAS :: .: : .:: ..: : : : : NP_059 PNSYAEPLAAPGGGERYSRSAGMYMQSGSDFNCGVMRGCGLAPSLSKR--DEGSSPSLAL 10 20 30 40 50 60 40 50 60 70 80 pF1KB8 NLYLPSCTYYMPEFSTVFSFLPQAPSR---QISYPYSA-QVPP-VREVSYGLEPSGKWHH : : :: :. .... . :.: : .. : :. . :: :.: . :.. NP_059 NTY-PS---YLSQLDSWGD--PKAAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAE--- 70 80 90 100 110 90 100 110 120 130 140 pF1KB8 RNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSA----PHATPAGFYSSV . . :. :: .. . :: : . : . . : . :: :: . :. . . NP_059 KRAKSGPEAA----LYSHPLPESCLGEHEVPVPSYYRASPSYSALDKTPHCSGANDFEAP 120 130 140 150 160 170 150 160 170 180 190 pF1KB8 --NKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAEAGAEA .. :. :.: . ... :: : : : . .. . : ..::. . .:. NP_059 FEQRASLNPRA--EHLESPQLGGKVSFPETPKSDS-QTPSPNEIKTEQSLAGPKGSPSES 180 190 200 210 220 230 200 210 220 230 240 250 pF1KB8 EAEEENTNPSSSGSAHSVAKEPAK-----GAAPNAPRTRKKRCPYSKFQIRELEREFFFN : :. .. :: .. . ::: : : .: :::::::.: : :::.::.:: NP_059 EKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEFLFN 240 250 260 270 280 290 260 270 280 290 300 pF1KB8 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRD-RLQYFSGNPLL .:...:.::..:. .::::::::::::::::: ::..:. :.. ...: NP_059 MYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRENRIRELTSNFNFT 300 310 320 330 340 >>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa) initn: 376 init1: 310 opt: 362 Z-score: 279.2 bits: 60.2 E(85289): 8.2e-09 Smith-Waterman score: 362; 43.5% identity (73.2% similar) in 138 aa overlap (165-301:274-406) 140 150 160 170 180 190 pF1KB8 AGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGEPEAPPASGLASRAE :: :.. : ..:. :: .: : :: NP_061 QPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASS---SAAE 250 260 270 280 290 300 200 210 220 230 240 250 pF1KB8 AGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFN . : .: ...: ... ..: ... :. .: :::::::.: : :::.::.:: NP_061 ELSPAPSESSKASPEKDSLGNSKGENAANWL--TAKSGRKKRCPYTKHQTLELEKEFLFN 310 320 330 340 350 260 270 280 290 300 pF1KB8 VYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRD-RLQYFSGNPLL .:...:.::..:: ..:::::::::::::::: ::..:. :.. ...: NP_061 MYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS 360 370 380 390 400 410 >>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa) initn: 335 init1: 304 opt: 335 Z-score: 261.9 bits: 56.3 E(85289): 7.5e-08 Smith-Waterman score: 337; 31.4% identity (55.8% similar) in 226 aa overlap (79-294:40-254) 50 60 70 80 90 100 pF1KB8 SFLPQAPSRQISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPS ::: ... :: : . : NP_008 YYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPDCSDFPSCSFAPKPAVFSTSWAP- 10 20 30 40 50 60 110 120 130 140 150 160 pF1KB8 TVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGD---- . ...: : . :: : . .. . : . : . :: NP_008 ------VPSQSSVVYHPYGPQPHL---GADTRYMRTWLEPLSGAVSFPSFPAGGRHYALK 70 80 90 100 110 170 180 190 200 210 220 pF1KB8 PPAEP----PCSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKE : : : : : ::... :. .: : .: . : .. .:. . ... . NP_008 PDAYPGRRADC-GPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLD 120 130 140 150 160 170 230 240 250 260 270 pF1KB8 PAKGAAP--NAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKI :.. .: .: ::::::::.:.: :::.::.::.:.....: ...:.::::.::::: NP_008 PSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKI 180 190 200 210 220 230 280 290 300 pF1KB8 WFQNRRMKEKKLSRDRLQYFSGNPLL :::::::: ::..... NP_008 WFQNRRMKMKKMNKEKTDKEQS 240 250 260 >>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa) initn: 369 init1: 312 opt: 333 Z-score: 260.3 bits: 56.1 E(85289): 9.3e-08 Smith-Waterman score: 335; 34.2% identity (62.6% similar) in 187 aa overlap (124-294:84-268) 100 110 120 130 140 150 pF1KB8 AAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDR ::: :.. : . ... .. ... . NP_689 CSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLE 60 70 80 90 100 110 160 170 180 190 pF1KB8 FFDNAYCGGGDPPAEP------PCSGK-GEAK-------GEPEAPPASGLASRAEAGAEA .: .: : ..: : :.. :. . . .: ..: . .:. NP_689 PTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQPSEG 120 130 140 150 160 170 200 210 220 230 240 250 pF1KB8 EAEEENTNPSSSGSAHSVAKEPAKGAAP--NAPRTRKKRCPYSKFQIRELEREFFFNVYI :.:.. :.:. . .: . :: .: ::::::::.: : :::.::.::.:. NP_689 AFSENNAENESGGDKPPI--DPNNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYL 180 190 200 210 220 230 260 270 280 290 300 pF1KB8 NKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL ....: ...:.::::.::::::::::::: ::...:: NP_689 TRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE 240 250 260 270 >>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D (340 aa) initn: 356 init1: 308 opt: 334 Z-score: 259.9 bits: 56.3 E(85289): 9.7e-08 Smith-Waterman score: 341; 30.6% identity (55.9% similar) in 304 aa overlap (20-301:41-336) 10 20 30 40 pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFST--- ::.: : . .: ::: . . .. NP_002 NTFLVDSLISACRSDSFYSSSASMYMPPPSADMGTYGMQTCGL-LPSLAKREVNHQNMGM 20 30 40 50 60 50 60 70 80 90 pF1KB8 -VFSFLPQA-----PSR--QISYPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADE : ..::. :.: .: : . ::: .. : :. . .. .. .: NP_002 NVHPYIPQVDSWTDPNRSCRIEQPVTQQVPTCSFTTNIKEESNCCMYSDKRNKLISAEVP 70 80 90 100 110 120 100 110 120 130 140 pF1KB8 LMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHAT---------PAGFYSSVNKNSVLPQ ..: .: : .: . : :. . : .:: : : ::. .. :. NP_002 SYQR-LVPESCPVE---NPEVPVPGYFRLSQTYATGKTQEYNNSPEG--SSTVMLQLNPR 130 140 150 160 170 180 150 160 170 180 190 200 pF1KB8 AFDRFFDNAYCGGGDPPAEPPCSGKGEAK-GEPEAPPASGLASRAEAGAEAEAEEENTNP . . .: . . : ::. .: .. :.: :.: . : . ::. . . NP_002 GAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKG-GLPEERSCLAEVSVSSPEV 190 200 210 220 230 240 210 220 230 240 250 260 pF1KB8 SSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRM . . : . . .. . .: :::::::.: : :::.::.::.:...:.::..:. NP_002 QEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKS 250 260 270 280 290 300 270 280 290 300 pF1KB8 LNLTDRQVKIWFQNRRMKEKKLSRD-RLQYFSGNPLL .::::::::::::::::: ::.::. :.. ...: NP_002 VNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS 310 320 330 340 >>NP_776272 (OMIM: 142975) homeobox protein Hox-C12 [Hom (282 aa) initn: 312 init1: 251 opt: 330 Z-score: 257.9 bits: 55.7 E(85289): 1.3e-07 Smith-Waterman score: 343; 32.6% identity (53.6% similar) in 276 aa overlap (38-290:23-272) 10 20 30 40 50 60 pF1KB8 GNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVFSFLPQAPSRQISYPYSAQV :.:.:.: . . :: :: .::: .: NP_776 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPS--LSYPRRDNV 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 PPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHP . : :: :.: . : .. .. :: : : . : . : ...: NP_776 CSLSWPSA--EPC------NGYPQPYLGSPVSLN----PPFGRTCELARVEDGKGYYREP 60 70 80 90 130 140 150 160 pF1KB8 SA---------------PHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGD-------P : : : :.. .. .. : :. .: : ::: : NP_776 CAEGGGGGLKREERGRDPGAGPGAALLPLEPSG--PPALGFKYDYAAGGGGGDGGGGAGP 100 110 120 130 140 150 170 180 190 200 210 220 pF1KB8 PAEPP-CSGKGEAKGEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKG : .:: :.. :. .:.: .... :: : ..: . :.. :.. : NP_776 PHDPPSCQSL-------ESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWY- 160 170 180 190 200 230 240 250 260 270 280 pF1KB8 AAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRR : :.:::: ::::.:. ::: ::. : .:....: .:: :::.:.:::::::::: NP_776 --PINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRR 210 220 230 240 250 260 290 300 pF1KB8 MKEKKLSRDRLQYFSGNPLL ::.:.: NP_776 MKKKRLLLREQALSFF 270 280 >>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa) initn: 372 init1: 309 opt: 330 Z-score: 256.8 bits: 55.8 E(85289): 1.4e-07 Smith-Waterman score: 332; 40.4% identity (66.7% similar) in 141 aa overlap (158-294:219-347) 130 140 150 160 170 180 pF1KB8 SAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAE-PPCSGKGEAKGEPEA--- : :: : : .: : ...:: : NP_055 KRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTG-GSSEPSACSD 190 200 210 220 230 240 190 200 210 220 230 240 pF1KB8 PPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYSKFQ : : . . : ... .... .:.. :: . .: ::::::::.:.: NP_055 HPIPGCSLKEEEKQHSQPQQQQLDPNN----------PAANWI-HARSTRKKRCPYTKYQ 250 260 270 280 290 250 260 270 280 290 300 pF1KB8 IRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPL :::.::.::.:.....: ...:.::::.::::::::::::: ::.:... NP_055 TLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD 300 310 320 330 340 350 pF1KB8 L 304 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:31:44 2016 done: Sun Nov 6 04:31:46 2016 Total Scan time: 8.730 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]