FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8944, 304 aa
  1>>>pF1KB8944 304 - 304 aa - 304 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2466+/-0.000811; mu= 9.5825+/- 0.050
 mean_var=199.1455+/-41.567, 0's: 0 Z-trim(114.7): 138  B-trim: 11 in 1/51
 Lambda= 0.090884
 statistics sampled from 15135 (15288) to 15135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.47), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS8867.1 HOXC11 gene_id:3227|Hs108|chr12         ( 304) 2095 286.4 1.8e-77
CCDS2265.1 HOXD11 gene_id:3237|Hs108|chr2          ( 338)  643 96.1   4e-20
CCDS5411.1 HOXA11 gene_id:3207|Hs108|chr7          ( 313)  518 79.7 3.2e-15


>>CCDS8867.1 HOXC11 gene_id:3227|Hs108|chr12              (304 aa)
 initn: 2095 init1: 2095 opt: 2095  Z-score: 1504.3  bits: 286.4 E(32554): 1.8e-77
Smith-Waterman score: 2095; 99.7% identity (99.7% similar) in 304 aa overlap (1-304:1-304)

               10        20        30        40        50        60
pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVFSFLPQAPSRQIS
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS88 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYMPEFSTVSSFLPQAPSRQIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 YPYSAQVPPVREVSYGLEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 YGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPAEPPCSGKGEAKGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 PEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPNAPRTRKKRCPYS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSG
              250       260       270       280       290       300

           
pF1KB8 NPLL
       ::::
CCDS88 NPLL
           

>>CCDS2265.1 HOXD11 gene_id:3237|Hs108|chr2               (338 aa)
 initn: 833 init1: 466 opt: 643  Z-score: 474.8  bits: 96.1 E(32554): 4e-20
Smith-Waterman score: 792; 44.5% identity (66.1% similar) in 339 aa overlap (21-304:3-338)

               10        20        30        40          50        
pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYM-P-EFSTVFSFLPQAPSRQ
                           :: : :. :...:::.:.::. : .:..  ::: :  : :
CCDS22                   MNDFDECGQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQ
                                 10        20        30        40  

       60            70           80                               
pF1KB8 ISYPYSA----QVPPVREVS---YGLEPSGKWHHRNS-----------------------
       ...:::.    .: :::::.   ::::  .:: .:..                       
CCDS22 MTFPYSSNLAPHVQPVREVAFRDYGLE-RAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAG
             50        60         70        80        90       100 

        90                  100        110        120       130    
pF1KB8 -YSSCYAAA-----------DELMHRECLPPS-TVTEILMKN-EGSYGGHHHPSAPHATP
        :.  ::::           .  :.:: :::.    ..:.:  :   ..   : .: .. 
CCDS22 GYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAA
             110       120       130       140       150       160 

          140       150           160       170        180         
pF1KB8 AGFYSSVNKNSVLPQAFDRFFDNA----YCGGGDPPAEPPCSGKGEA-KGEPEAPPASGL
       ..:::.:..:..:::.::.:.. :    . :   ::   : . .: : ::.:..  ..: 
CCDS22 SNFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGG
             170       180       190       200       210       220 

     190          200       210       220        230       240     
pF1KB8 AS---RAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGA-APNAPRTRKKRCPYSKFQIR
       .:   .:  :.: ..  :... .. :    .. : ...: ::.  :.:::::::.:.:::
CCDS22 GSPCTKATPGSEPKGAAEGSGGDGEGPPGEAGAEKSSSAVAPQ--RSRKKRCPYTKYQIR
             230       240       250       260         270         

         250       260       270       280       290       300    
pF1KB8 ELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL
       :::::::::::::::::::::::::::::::::::::::::::::.:::::::.::::.
CCDS22 ELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF
     280       290       300       310       320       330        

>>CCDS5411.1 HOXA11 gene_id:3207|Hs108|chr7               (313 aa)
 initn: 766 init1: 480 opt: 518  Z-score: 386.7  bits: 79.7 E(32554): 3.2e-15
Smith-Waterman score: 956; 52.2% identity (73.0% similar) in 318 aa overlap (21-304:2-313)

               10        20        30        40          50        
pF1KB8 MFNSVNLGNFCSPSRKERGADFGERGSCASNLYLPSCTYYM--PEFSTVFSFLPQAPS-R
                           :: ::: :.::.::::::::.  :.::.. :::::.:: :
CCDS54                    MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLPQTPSSR
                                  10        20        30        40 

        60           70           80        90       100        110
pF1KB8 QISYPYSAQVP---PVREVS---YGLEPSGKWHHRNSYSSCYAAADELMHRECLP-PSTV
        ..: ::...:   :::::.   :..::. ::: :.. . ::.: .::.::.::  ::..
CCDS54 PMTYSYSSNLPQVQPVREVTFREYAIEPATKWHPRGNLAHCYSA-EELVHRDCLQAPSAA
              50        60        70        80         90       100

                 120       130       140       150       160       
pF1KB8 T---EILMKNEGSYGGHHHPSAPHATPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDPPA
           ..: :. ..   .:::. : :. ..:::.:..:.:::::::.::..:: :  .  :
CCDS54 GVPGDVLAKSSANV--YHHPT-P-AVSSNFYSTVGRNGVLPQAFDQFFETAY-GTPENLA
              110          120        130       140        150     

       170        180       190                          200       
pF1KB8 EPPCSG-KGEAKGEPEAPPASGLASRAEAGAEA-------------------EAEEENTN
            : :.  :: : :  .:. :. : .:: :                   : .:.   
CCDS54 SSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRR
         160       170       180       190       200       210     

       210       220        230       240       250       260      
pF1KB8 PSSSGSAHSVAKEPA-KGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLS
       : ::.: .: . .   :... .. :::::::::.:.:::::::::::.::::::::::::
CCDS54 PESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLS
         220       230       240       250       260       270     

        270       280       290       300    
pF1KB8 RMLNLTDRQVKIWFQNRRMKEKKLSRDRLQYFSGNPLL
       :::::::::::::::::::::::..::::::.:.::::
CCDS54 RMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL
         280       290       300       310   




304 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:31:44 2016 done: Sun Nov  6 04:31:44 2016
 Total Scan time:  2.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]