FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3233, 543 aa 1>>>pF1KE3233 543 - 543 aa - 543 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5007+/-0.000804; mu= 14.0333+/- 0.049 mean_var=105.8590+/-20.722, 0's: 0 Z-trim(111.3): 7 B-trim: 0 in 0/51 Lambda= 0.124655 statistics sampled from 12253 (12258) to 12253 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.377), width: 16 Scan time: 3.860 The best scores are: opt bits E(32554) CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 ( 543) 3635 664.2 1.1e-190 CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 ( 585) 1503 280.8 3e-75 CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 ( 589) 891 170.8 4e-42 >>CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 (543 aa) initn: 3635 init1: 3635 opt: 3635 Z-score: 3537.2 bits: 664.2 E(32554): 1.1e-190 Smith-Waterman score: 3635; 100.0% identity (100.0% similar) in 543 aa overlap (1-543:1-543) 10 20 30 40 50 60 pF1KE3 MDAFTGSGLKRKFDDVDVGSSVSNSDDEISSSDSADSCDSLNPPTTASFTPTSILKRQKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 MDAFTGSGLKRKFDDVDVGSSVSNSDDEISSSDSADSCDSLNPPTTASFTPTSILKRQKQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEVNHRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 LRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEVNHRE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 ILREHLKEEKLHAKKMKLTKNGTVESVEADGLTLDDVSDEDIDVENVEVDDYFFLQPLPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 ILREHLKEEKLHAKKMKLTKNGTVESVEADGLTLDDVSDEDIDVENVEVDDYFFLQPLPT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KRRRALLRASGVHRIDAEEKQELRAIRLSREECGCDCRLYCDPEACACSQAGIKCQVDRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 KRRRALLRASGVHRIDAEEKQELRAIRLSREECGCDCRLYCDPEACACSQAGIKCQVDRM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 SFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELESKRQVSRPAAPDEEPSPTASC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 SFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELESKRQVSRPAAPDEEPSPTASC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 SLTGAQGSETQDFQEFIAENETAVMHLQSAEELERLKAEEDSSGSSASLDSSIESLGVCI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 SLTGAQGSETQDFQEFIAENETAVMHLQSAEELERLKAEEDSSGSSASLDSSIESLGVCI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 LEEPLAVPEELCPGLTAPILIQAQLPPGSSVLCFTENSDHPTASTVNSPSYLNSGPLVYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 LEEPLAVPEELCPGLTAPILIQAQLPPGSSVLCFTENSDHPTASTVNSPSYLNSGPLVYY 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 QVEQRPVLGVKGEPGTEEGSASFPKEKDLNVFSLPVTSLVACSSTDPAALCKSEVGKTPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 QVEQRPVLGVKGEPGTEEGSASFPKEKDLNVFSLPVTSLVACSSTDPAALCKSEVGKTPT 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 LEALLPEDCNPEEPENEDFHPSWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDSSLELP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 LEALLPEDCNPEEPENEDFHPSWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDSSLELP 490 500 510 520 530 540 pF1KE3 LAV ::: CCDS88 LAV >>CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 (585 aa) initn: 1511 init1: 1408 opt: 1503 Z-score: 1464.5 bits: 280.8 E(32554): 3e-75 Smith-Waterman score: 1577; 49.7% identity (71.2% similar) in 572 aa overlap (7-539:2-564) 10 20 30 40 50 pF1KE3 MDAFTGSG-LKRKFDDVDVGS---SVSNSDDEISSSDSADSCDSLNPPTTASFTPTSILK :: :::::..:: .: :: .::::.:::.:::: ::.:: :.. :::.:::: CCDS22 MSGILKRKFEEVDGSSPCSSVRESDDEVSSSESADSGDSVNPSTSSHFTPSSILK 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 RQKQLRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEV :.:.:: :::.:. ::::::.::::::::::::::.:::..::::::.::: :::.::: CCDS22 REKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGSTLGMSSRHNSVRQYTLGEFAREQER 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 NHREILREHLKEEKLHAKKMKLTKNGTVESVEADGLTLDDVSDEDIDVENVEVDDYFFLQ :::.:::::.::::.. :.:.:::::::: ::. :::::.::.:::..:.:::.::::: CCDS22 LHREMLREHLREEKLNSLKLKMTKNGTVESEEASTLTLDDISDDDIDLDNTEVDEYFFLQ 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 PLPTKRRRALLRASGVHRIDAEEKQELRAIRLSREECGCDCRLYCDPEACACSQAGIKCQ :::::.::::::::::..::.:::.::::::::::.::::::..:::..:.:: :::::: CCDS22 PLPTKKRRALLRASGVKKIDVEEKHELRAIRLSREDCGCDCRVFCDPDTCTCSLAGIKCQ 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 VDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELESKRQVSRPAAPDEEPSP ::::::::::...::.: ::::::::::::::.::::::::::..:. . :. . CCDS22 VDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEKNREQQIPTLNGCHSEI 240 250 260 270 280 290 300 310 320 330 340 pF1KE3 TASCSLTG--AQGSETQ--DFQEFIAENETAVMHLQSAEEL----ERLKAEED-SSGSSA .: : : :.. : . : :. .: ..::.:::::::: :. . ::: :: :. CCDS22 SAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHLQSAEELDCQGEEEEEEEDGSSFCSG 300 310 320 330 340 350 350 360 370 380 390 pF1KE3 SLDSSIESLGVCILEEPLAVPEELCP----------GLTAPILIQAQLPPGSSVLCFTEN ::: .::. .: :: :.. . .:.. : ::::.... CCDS22 VTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKGDGFVEGLGTHAEVVPLPSVLCYSDG 360 370 380 390 400 410 400 410 420 430 440 450 pF1KE3 SDHPTASTVNSPSYLNSGPLVYYQVEQRPVLGVKGEPGTEEGSASFPKEKDL---NVFSL . . . :. : ::. : :::.... ::: . . .:.: ...:: CCDS22 TAVHESHAKNASFYANSSTL-YYQIDSHI-------PGTPNQISENYSERDTVKNGTLSL 420 430 440 450 460 460 470 480 490 500 pF1KE3 PVTSLVACSSTDPAALCKSEVGKT------PTL-------EALLPEDCNPEEPENEDFHP ... . .: : . : . :.. : :: ::... :: CCDS22 VPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSENDSGVPCNSLYPEHRSNHP 470 480 490 500 510 520 510 520 530 540 pF1KE3 SWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDSSLELPLAV . : .. ..:: . ..... .. : ..:: : CCDS22 QVEFHSY-LKGPSQEGFVSALNGDSHISEHPAENSLSLAEKSILHEECIKSPVVETVPV 530 540 550 560 570 580 >>CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 (589 aa) initn: 994 init1: 551 opt: 891 Z-score: 869.7 bits: 170.8 E(32554): 4e-42 Smith-Waterman score: 905; 49.1% identity (69.1% similar) in 324 aa overlap (9-296:5-323) 10 20 30 40 pF1KE3 MDAFTGSGLKRKFDDVDV-GSSVSNSDDEISSSDSADSC------------------DSL ::::::..: .::::.:.. ::. .. :: :.. CCDS26 MTGLLKRKFDQLDEDNSSVSSSSS--SSGCQSRSCSPSSSVSRAWDSEEEGPWDQM 10 20 30 40 50 50 60 70 80 90 pF1KE3 NPPTTA-----SFTPTSILKRQKQLRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMA : :::: ::::: .. : : :: .::.:: : ::::::::.:: .:::: CCDS26 PLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMA 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE3 QRHNSVRSYTLCEFAQEQEVNHREILREHLKEEKLHAKKMKLTKNGTVESVEADGL---- ::.. : ..: :::::: ..: ::..::::::. . ::. : : ..:: :: CCDS26 LRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAG-VPQAEA-GLPPVV 120 130 140 150 160 170 160 170 180 190 200 pF1KE3 -TLDDVS-DED--IDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRAIRL ..::.: .:: . : . .... :::: :..:::::::::::.::: :::.::.:.: CCDS26 DAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQ 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE3 SREECGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTH :::.::: : ::::.:.:: ::::::.:. .::::: :.:: : ::.::: ::.:: CCDS26 SREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTH 240 250 260 270 280 290 270 280 290 300 310 320 pF1KE3 YLHTIMKLELESK----RQVSRPAAPDEEPSPTASCSLTGAQGSETQDFQEFIAENETAV ..::. .:.::.. :.. :: . ::: CCDS26 FIHTLTRLQLEQEAESFRELEAPAQGSP-PSPGEEALVPTFPLAKPPMNNELGDNSCSSD 300 310 320 330 340 350 330 340 350 360 370 380 pF1KE3 MHLQSAEELERLKAEEDSSGSSASLDSSIESLGVCILEEPLAVPEELCPGLTAPILIQAQ CCDS26 MTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEE 360 370 380 390 400 410 543 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:49:32 2016 done: Sun Nov 6 14:49:32 2016 Total Scan time: 3.860 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]