FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3118, 292 aa
  1>>>pF1KE3118 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5988+/-0.00066; mu= 14.0660+/- 0.040
 mean_var=71.5313+/-14.245, 0's: 0 Z-trim(111.3): 7  B-trim: 0 in 0/51
 Lambda= 0.151644
 statistics sampled from 12296 (12300) to 12296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.378), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS8790.1 BCDIN3D gene_id:144233|Hs108|chr12      ( 292) 2036 454.0 5.9e-128


>>CCDS8790.1 BCDIN3D gene_id:144233|Hs108|chr12           (292 aa)
 initn: 2036 init1: 2036 opt: 2036  Z-score: 2410.7  bits: 454.0 E(32554): 5.9e-128
Smith-Waterman score: 2036; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:1-292)

               10        20        30        40        50        60
pF1KE3 MAVPTELDGGSVKETAAEEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MAVPTELDGGSVKETAAEEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ESPENGPILGLDVGCNSGDLSVALYKHFLSLPDGETCSDASREFRLLCCDIDPVLVKRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 ESPENGPILGLDVGCNSGDLSVALYKHFLSLPDGETCSDASREFRLLCCDIDPVLVKRAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KECPFPDALTFITLDFMNQRTRKVLLSSFLSQFGRSVFDIGFCMSITMWIHLNHGDHGLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KECPFPDALTFITLDFMNQRTRKVLLSSFLSQFGRSVFDIGFCMSITMWIHLNHGDHGLW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EFLAHLSSLCHYLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAIRGDMPNQIVQILTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EFLAHLSSLCHYLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAIRGDMPNQIVQILTQ
              190       200       210       220       230       240

              250       260       270       280       290  
pF1KE3 DHGMELICCFGNTSWDRSLLLFRAKQTIETHPIPESLIEKGKEKNRLSFQKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 DHGMELICCFGNTSWDRSLLLFRAKQTIETHPIPESLIEKGKEKNRLSFQKQ
              250       260       270       280       290  




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:51:16 2016 done: Sun Nov  6 14:51:16 2016
 Total Scan time:  2.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]