FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4020, 205 aa 1>>>pF1KE4020 205 - 205 aa - 205 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2413+/-0.000952; mu= 13.4522+/- 0.057 mean_var=68.0329+/-13.681, 0's: 0 Z-trim(104.4): 127 B-trim: 0 in 0/49 Lambda= 0.155494 statistics sampled from 7740 (7875) to 7740 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.242), width: 16 Scan time: 1.960 The best scores are: opt bits E(32554) CCDS8679.1 RERGL gene_id:79785|Hs108|chr12 ( 205) 1337 308.9 1.4e-84 CCDS66332.1 RERGL gene_id:79785|Hs108|chr12 ( 204) 1226 284.0 4.4e-77 CCDS8673.1 RERG gene_id:85004|Hs108|chr12 ( 199) 332 83.4 1e-16 CCDS9321.1 RASL11A gene_id:387496|Hs108|chr13 ( 242) 294 75.0 4.4e-14 CCDS1123.1 RIT1 gene_id:6016|Hs108|chr1 ( 219) 275 70.7 7.8e-13 CCDS58037.1 RIT1 gene_id:6016|Hs108|chr1 ( 236) 275 70.7 8.3e-13 CCDS58036.1 RIT1 gene_id:6016|Hs108|chr1 ( 183) 270 69.5 1.5e-12 CCDS3490.1 RASL11B gene_id:65997|Hs108|chr4 ( 248) 270 69.6 1.9e-12 CCDS53753.1 RERG gene_id:85004|Hs108|chr12 ( 180) 257 66.6 1.1e-11 CCDS3100.1 MRAS gene_id:22808|Hs108|chr3 ( 208) 249 64.8 4.2e-11 CCDS10200.1 RASL12 gene_id:51285|Hs108|chr15 ( 266) 246 64.2 8.3e-11 >>CCDS8679.1 RERGL gene_id:79785|Hs108|chr12 (205 aa) initn: 1337 init1: 1337 opt: 1337 Z-score: 1631.9 bits: 308.9 E(32554): 1.4e-84 Smith-Waterman score: 1337; 100.0% identity (100.0% similar) in 205 aa overlap (1-205:1-205) 10 20 30 40 50 60 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SQTQKAKFSLTSELHWADGFVIVYDISDRSSFAFAKALIYRIREPQTSHCKRAVESAVFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 SQTQKAKFSLTSELHWADGFVIVYDISDRSSFAFAKALIYRIREPQTSHCKRAVESAVFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 VGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMFIRIIKDILINFKLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 VGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMFIRIIKDILINFKLKE 130 140 150 160 170 180 190 200 pF1KE4 KRRPSGSKSMAKLINNVFGKRRKSV ::::::::::::::::::::::::: CCDS86 KRRPSGSKSMAKLINNVFGKRRKSV 190 200 >>CCDS66332.1 RERGL gene_id:79785|Hs108|chr12 (204 aa) initn: 1226 init1: 1226 opt: 1226 Z-score: 1497.3 bits: 284.0 E(32554): 4.4e-77 Smith-Waterman score: 1226; 100.0% identity (100.0% similar) in 187 aa overlap (19-205:18-204) 10 20 30 40 50 60 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPC :::::::::::::::::::::::::::::::::::::::::: CCDS66 MNDVKLAVLGGEGTGKSALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPC 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 SQTQKAKFSLTSELHWADGFVIVYDISDRSSFAFAKALIYRIREPQTSHCKRAVESAVFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 SQTQKAKFSLTSELHWADGFVIVYDISDRSSFAFAKALIYRIREPQTSHCKRAVESAVFL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 VGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMFIRIIKDILINFKLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS66 VGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMFIRIIKDILINFKLKE 120 130 140 150 160 170 190 200 pF1KE4 KRRPSGSKSMAKLINNVFGKRRKSV ::::::::::::::::::::::::: CCDS66 KRRPSGSKSMAKLINNVFGKRRKSV 180 190 200 >>CCDS8673.1 RERG gene_id:85004|Hs108|chr12 (199 aa) initn: 362 init1: 126 opt: 332 Z-score: 413.6 bits: 83.4 E(32554): 1e-16 Smith-Waterman score: 332; 34.9% identity (65.1% similar) in 186 aa overlap (19-200:21-196) 10 20 30 40 50 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYD ::.::::::::: :: ..:: :... .. . ...:: : CCDS86 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 PCSQTQKAKFSLTSELHWADGFVIVYDISDRSSFAFA---KALIYRIREPQTSHCKRAVE . :. .. ....:..:::.::::.::.:: . : .. .:..:.. CCDS86 --TAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV------- 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 SAVFLVGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMFIRIIKDILIN ...::::: :: : :.:. :::.::: : : : : :: .. .: .. ... CCDS86 -TLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 120 130 140 150 160 170 180 190 200 pF1KE4 FKLKEK-RRPSGSKSMAKLINNVFGKRRKSV .. : :: :.. . . ::... : CCDS86 RMVQGKTRRRSSTTHVKQAINKMLTKISS 180 190 >>CCDS9321.1 RASL11A gene_id:387496|Hs108|chr13 (242 aa) initn: 331 init1: 119 opt: 294 Z-score: 366.3 bits: 75.0 E(32554): 4.4e-14 Smith-Waterman score: 294; 35.1% identity (64.4% similar) in 174 aa overlap (19-185:42-210) 10 20 30 40 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLE :. ::::::::::.: : ..:.. . .: CCDS93 LAPIPESSSDYLLPKDIKLAVLGAGRVGKSAMIVRFLTKRFIGDYEPNTGKLYSRLVYVE 20 30 40 50 60 70 50 60 70 80 90 100 pF1KE4 RKQLNLEIYDPCSQTQ------KAKFSLTSELHWADGFVIVYDISDRSSFAFAKALIYRI ::.:.: : . .: .. ::.. ..::.::..::.:.: .:. . : .: CCDS93 GDQLSLQIQDTPGGVQIQDSLPQVVDSLSKCVQWAEGFLLVYSITDYDSYLSIRPLYQHI 80 90 100 110 120 130 110 120 130 140 150 160 pF1KE4 REPQTSHCKRAVESAVFLVGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVE :. . . .. :..:::: :: :.:.: ..: .:: : : :.:..:. .: CCDS93 RKVHPDS-----KAPVIIVGNKGDLLHARQVQTQDGIQLANELGSLFLEISTSENYEDVC 140 150 160 170 180 170 180 190 200 pF1KE4 MMFIRIIKDILINFKLK-EKRRPSGSKSMAKLINNVFGKRRKSV .: .. :.. :. :.:: : CCDS93 DVFQHLCKEVSKMHGLSGERRRASIIPRPRSPNMQDLKRRFKQALSPKVKAPSALG 190 200 210 220 230 240 >>CCDS1123.1 RIT1 gene_id:6016|Hs108|chr1 (219 aa) initn: 273 init1: 127 opt: 275 Z-score: 343.9 bits: 70.7 E(32554): 7.8e-13 Smith-Waterman score: 275; 32.3% identity (61.5% similar) in 195 aa overlap (19-205:36-218) 10 20 30 40 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLE :.:..:...:: .. ..:. :: .. .. CCDS11 RPVGSCCSSPAGLSREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRID 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE4 RKQLNLEIYDPCSQTQKAKFSLTSE--LHWADGFVIVYDISDRSSFAFA---KALIYRIR . ::.: : .: :.:. . .. ..::.: :.:.:: :: . : ::::.: CCDS11 DEPANLDILDTAGQ---AEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVR 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 EPQTSHCKRAVESAVFLVGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEM :. .. : ::::: :: ..:.: ::: :: : : : : ::: . .. CCDS11 --------RTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYR-YYIDD 130 140 150 160 170 170 180 190 200 pF1KE4 MFIRIIKDILINFK---LKEKRRPSGSKSMAKLINNVFGKRRKSV .: ....: . : : ... . ..:. : ... : :.. :: CCDS11 VFHALVREIRRKEKEAVLAMEKKSKPKNSVWKRLKSPFRKKKDSVT 180 190 200 210 >>CCDS58037.1 RIT1 gene_id:6016|Hs108|chr1 (236 aa) initn: 273 init1: 127 opt: 275 Z-score: 343.4 bits: 70.7 E(32554): 8.3e-13 Smith-Waterman score: 275; 32.3% identity (61.5% similar) in 195 aa overlap (19-205:53-235) 10 20 30 40 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLE :.:..:...:: .. ..:. :: .. .. CCDS58 RPVGSCCSSPAGLSREYKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIRIRID 30 40 50 60 70 80 50 60 70 80 90 100 pF1KE4 RKQLNLEIYDPCSQTQKAKFSLTSE--LHWADGFVIVYDISDRSSFAFA---KALIYRIR . ::.: : .: :.:. . .. ..::.: :.:.:: :: . : ::::.: CCDS58 DEPANLDILDTAGQ---AEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVR 90 100 110 120 130 110 120 130 140 150 160 pF1KE4 EPQTSHCKRAVESAVFLVGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEM :. .. : ::::: :: ..:.: ::: :: : : : : ::: . .. CCDS58 --------RTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYR-YYIDD 140 150 160 170 180 190 170 180 190 200 pF1KE4 MFIRIIKDILINFK---LKEKRRPSGSKSMAKLINNVFGKRRKSV .: ....: . : : ... . ..:. : ... : :.. :: CCDS58 VFHALVREIRRKEKEAVLAMEKKSKPKNSVWKRLKSPFRKKKDSVT 200 210 220 230 >>CCDS58036.1 RIT1 gene_id:6016|Hs108|chr1 (183 aa) initn: 246 init1: 127 opt: 270 Z-score: 339.0 bits: 69.5 E(32554): 1.5e-12 Smith-Waterman score: 270; 32.0% identity (61.3% similar) in 194 aa overlap (20-205:1-182) 10 20 30 40 50 60 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPC .:..:...:: .. ..:. :: .. .. . ::.: : CCDS58 MTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTA 10 20 30 40 70 80 90 100 110 pF1KE4 SQTQKAKFSLTSE--LHWADGFVIVYDISDRSSFAFA---KALIYRIREPQTSHCKRAVE .: :.:. . .. ..::.: :.:.:: :: . : ::::.: :. . CCDS58 GQ---AEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVR--------RTDD 50 60 70 80 90 120 130 140 150 160 170 pF1KE4 SAVFLVGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMFIRIIKDILIN . : ::::: :: ..:.: ::: :: : : : : ::: . .. .: ....: . CCDS58 TPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYR-YYIDDVFHALVREIRRK 100 110 120 130 140 180 190 200 pF1KE4 FK---LKEKRRPSGSKSMAKLINNVFGKRRKSV : : ... . ..:. : ... : :.. :: CCDS58 EKEAVLAMEKKSKPKNSVWKRLKSPFRKKKDSVT 150 160 170 180 >>CCDS3490.1 RASL11B gene_id:65997|Hs108|chr4 (248 aa) initn: 196 init1: 122 opt: 270 Z-score: 337.1 bits: 69.6 E(32554): 1.9e-12 Smith-Waterman score: 270; 32.8% identity (63.8% similar) in 174 aa overlap (19-187:48-210) 10 20 30 40 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLE ::.::::::::::.: : ..: ... .: CCDS34 NAAASDCCVGAAGRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIE 20 30 40 50 60 70 50 60 70 80 90 100 pF1KE4 RKQLNLEIYD-PCSQTQKAKFSLTSELH----WADGFVIVYDISDRSSFAFAKALIYRIR . : :.. : : :... ..: . .:. :::. :::..:.: .:. . . : .. CCDS34 GETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHV- 80 90 100 110 120 130 110 120 130 140 150 160 pF1KE4 EPQTSHCKRAVESAVFLVGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEM : : ... : .:.:: :: :...: . : .:: :.: :.:..:. .: CCDS34 --QQLHL--GTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYS 140 150 160 170 180 190 170 180 190 200 pF1KE4 MFIRIIKDILINFKLKEKRRPSGSKSMAKLINNVFGKRRKSV : . :.. ..:..::.. CCDS34 AFHVLCKEV------SHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVT 200 210 220 230 240 >>CCDS53753.1 RERG gene_id:85004|Hs108|chr12 (180 aa) initn: 231 init1: 126 opt: 257 Z-score: 323.3 bits: 66.6 E(32554): 1.1e-11 Smith-Waterman score: 257; 31.1% identity (62.3% similar) in 167 aa overlap (38-200:21-177) 10 20 30 40 50 60 pF1KE4 KYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQLNLEIYDPCSQTQKAK :: :... .. . ...:: : .: . . CCDS53 MAKSAEVKLAIFGRAGVGKSESTYRHQATIDDEVVSMEILDTAGQEDTIQ 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 FSLTSELHWADGFVIVYDISDRSSFAFA---KALIYRIREPQTSHCKRAVESAVFLVGNK ....:..:::.::::.::.:: . : .. .:..:.. ...::::: CCDS53 RE--GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV--------TLILVGNK 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 RDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMFIRIIKDILINFKLKEK-RR :: : :.:. :::.::: : : : : :: .. .: .. ... .. : :: CCDS53 ADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQGKTRR 110 120 130 140 150 160 190 200 pF1KE4 PSGSKSMAKLINNVFGKRRKSV :.. . . ::... : CCDS53 RSSTTHVKQAINKMLTKISS 170 180 >>CCDS3100.1 MRAS gene_id:22808|Hs108|chr3 (208 aa) initn: 224 init1: 106 opt: 249 Z-score: 312.7 bits: 64.8 E(32554): 4.2e-11 Smith-Waterman score: 249; 28.9% identity (61.8% similar) in 173 aa overlap (19-183:28-189) 10 20 30 40 50 pF1KE4 MSNFLHLKYNEKSVSVTKALTVRFLTKRFIGEYASNFESIYKKHLCLERKQ :::..:. : :. .: ..:. : :: .. . CCDS31 MATSAVPSDNLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQW 10 20 30 40 50 60 60 70 80 90 100 pF1KE4 LNLEIYDPCSQTQKAKFSLTSE--LHWADGFVIVYDISDRSSFAFA---KALIYRIREPQ :.. : .: . :: : .. .:::.:::...:..:: . . :: :... . CCDS31 AILDVLDTAGQEE---FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 TSHCKRAVESAVFLVGNKRDLCHVREVGWEEGQKLALENRCQFCELSAAEQSLEVEMMF- . ..::.:: :: :.:.. :.:...: .. . : :: . :.:. : CCDS31 SF--------PMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFH 120 130 140 150 160 170 180 190 200 pF1KE4 --IRIIKDILINFKLKEKRRPSGSKSMAKLINNVFGKRRKSV .:.:.. . . . :.:.. CCDS31 DLVRVIRQQIPEKSQKKKKKTKWRGDRATGTHKLQCVIL 170 180 190 200 205 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:26:17 2016 done: Sun Nov 6 03:26:17 2016 Total Scan time: 1.960 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]