FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3005, 83 aa 1>>>pF1KE3005 83 - 83 aa - 83 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1304+/-0.000225; mu= 5.5192+/- 0.014 mean_var=84.1387+/-16.546, 0's: 0 Z-trim(125.7): 7 B-trim: 896 in 2/56 Lambda= 0.139822 statistics sampled from 50082 (50092) to 50082 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.883), E-opt: 0.2 (0.587), width: 16 Scan time: 4.050 The best scores are: opt bits E(85289) NP_006196 (OMIM: 601190,610024) retinal cone rhodo ( 83) 583 125.4 1.1e-29 XP_016874920 (OMIM: 601190,610024) PREDICTED: reti ( 83) 583 125.4 1.1e-29 XP_016880224 (OMIM: 180073,268000,613582) PREDICTE ( 87) 475 103.6 4e-23 NP_002593 (OMIM: 180073,268000,613582) retinal rod ( 87) 475 103.6 4e-23 XP_016880225 (OMIM: 180073,268000,613582) PREDICTE ( 87) 475 103.6 4e-23 XP_006722005 (OMIM: 180073,268000,613582) PREDICTE ( 137) 475 103.7 5.9e-23 XP_016880223 (OMIM: 180073,268000,613582) PREDICTE ( 157) 475 103.7 6.6e-23 >>NP_006196 (OMIM: 601190,610024) retinal cone rhodopsin (83 aa) initn: 583 init1: 583 opt: 583 Z-score: 654.2 bits: 125.4 E(85289): 1.1e-29 Smith-Waterman score: 583; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83) 10 20 30 40 50 60 pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI 10 20 30 40 50 60 70 80 pF1KE3 TVICPWEAFSHLELHELAQFGII ::::::::::::::::::::::: NP_006 TVICPWEAFSHLELHELAQFGII 70 80 >>XP_016874920 (OMIM: 601190,610024) PREDICTED: retinal (83 aa) initn: 583 init1: 583 opt: 583 Z-score: 654.2 bits: 125.4 E(85289): 1.1e-29 Smith-Waterman score: 583; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83) 10 20 30 40 50 60 pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI 10 20 30 40 50 60 70 80 pF1KE3 TVICPWEAFSHLELHELAQFGII ::::::::::::::::::::::: XP_016 TVICPWEAFSHLELHELAQFGII 70 80 >>XP_016880224 (OMIM: 180073,268000,613582) PREDICTED: r (87 aa) initn: 475 init1: 475 opt: 475 Z-score: 536.1 bits: 103.6 E(85289): 4e-23 Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:19-87) 10 20 30 40 50 pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGL ::.::::::::::::::::::::::::::.:::::::::::: XP_016 MNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGL 10 20 30 40 50 60 60 70 80 pF1KE3 GTDITVICPWEAFSHLELHELAQFGII :::::::::::::.:::::::::.::: XP_016 GTDITVICPWEAFNHLELHELAQYGII 70 80 >>NP_002593 (OMIM: 180073,268000,613582) retinal rod rho (87 aa) initn: 475 init1: 475 opt: 475 Z-score: 536.1 bits: 103.6 E(85289): 4e-23 Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:19-87) 10 20 30 40 50 pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGL ::.::::::::::::::::::::::::::.:::::::::::: NP_002 MNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGL 10 20 30 40 50 60 60 70 80 pF1KE3 GTDITVICPWEAFSHLELHELAQFGII :::::::::::::.:::::::::.::: NP_002 GTDITVICPWEAFNHLELHELAQYGII 70 80 >>XP_016880225 (OMIM: 180073,268000,613582) PREDICTED: r (87 aa) initn: 475 init1: 475 opt: 475 Z-score: 536.1 bits: 103.6 E(85289): 4e-23 Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:19-87) 10 20 30 40 50 pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGL ::.::::::::::::::::::::::::::.:::::::::::: XP_016 MNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGL 10 20 30 40 50 60 60 70 80 pF1KE3 GTDITVICPWEAFSHLELHELAQFGII :::::::::::::.:::::::::.::: XP_016 GTDITVICPWEAFNHLELHELAQYGII 70 80 >>XP_006722005 (OMIM: 180073,268000,613582) PREDICTED: r (137 aa) initn: 475 init1: 475 opt: 475 Z-score: 533.1 bits: 103.7 E(85289): 5.9e-23 Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:69-137) 10 20 30 40 pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK ::.::::::::::::::::::::::::::. XP_006 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ 40 50 60 70 80 90 50 60 70 80 pF1KE3 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII :::::::::::::::::::::::::.:::::::::.::: XP_006 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII 100 110 120 130 >>XP_016880223 (OMIM: 180073,268000,613582) PREDICTED: r (157 aa) initn: 475 init1: 475 opt: 475 Z-score: 532.2 bits: 103.7 E(85289): 6.6e-23 Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:89-157) 10 20 30 40 pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK ::.::::::::::::::::::::::::::. XP_016 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ 60 70 80 90 100 110 50 60 70 80 pF1KE3 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII :::::::::::::::::::::::::.:::::::::.::: XP_016 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII 120 130 140 150 83 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:54:58 2016 done: Sun Nov 6 14:54:58 2016 Total Scan time: 4.050 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]