FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3005, 83 aa
  1>>>pF1KE3005 83 - 83 aa - 83 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7255+/-0.000469; mu= 7.9458+/- 0.029
 mean_var=85.0492+/-16.419, 0's: 0 Z-trim(118.3): 4  B-trim: 0 in 0/52
 Lambda= 0.139072
 statistics sampled from 19179 (19183) to 19179 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.887), E-opt: 0.2 (0.589), width:  16
 Scan time:  1.330

The best scores are:                                      opt bits E(32554)
CCDS8672.1 PDE6H gene_id:5149|Hs108|chr12          (  83)  583 124.6 6.7e-30
CCDS11783.1 PDE6G gene_id:5148|Hs108|chr17         (  87)  475 103.0 2.3e-23


>>CCDS8672.1 PDE6H gene_id:5149|Hs108|chr12               (83 aa)
 initn: 583 init1: 583 opt: 583  Z-score: 650.2  bits: 124.6 E(32554): 6.7e-30
Smith-Waterman score: 583; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83)

               10        20        30        40        50        60
pF1KE3 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDI
               10        20        30        40        50        60

               70        80   
pF1KE3 TVICPWEAFSHLELHELAQFGII
       :::::::::::::::::::::::
CCDS86 TVICPWEAFSHLELHELAQFGII
               70        80   

>>CCDS11783.1 PDE6G gene_id:5148|Hs108|chr17              (87 aa)
 initn: 475 init1: 475 opt: 475  Z-score: 532.8  bits: 103.0 E(32554): 2.3e-23
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (15-83:19-87)

                   10        20        30        40        50      
pF1KE3     MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGL
                         ::.::::::::::::::::::::::::::.::::::::::::
CCDS11 MNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGL
               10        20        30        40        50        60

         60        70        80   
pF1KE3 GTDITVICPWEAFSHLELHELAQFGII
       :::::::::::::.:::::::::.:::
CCDS11 GTDITVICPWEAFNHLELHELAQYGII
               70        80       




83 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:54:57 2016 done: Sun Nov  6 14:54:57 2016
 Total Scan time:  1.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]