FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1712, 216 aa 1>>>pF1KE1712 216 - 216 aa - 216 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7755+/-0.000339; mu= 16.9030+/- 0.021 mean_var=66.6969+/-13.188, 0's: 0 Z-trim(114.0): 204 B-trim: 0 in 0/55 Lambda= 0.157044 statistics sampled from 23363 (23577) to 23363 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.276), width: 16 Scan time: 4.560 The best scores are: opt bits E(85289) NP_031386 (OMIM: 611817) NKG2-D type II integral m ( 216) 1544 358.4 5.2e-99 NP_001107868 (OMIM: 602894) natural killer cells a ( 179) 307 78.0 1.1e-14 NP_002253 (OMIM: 602894) natural killer cells anti ( 179) 307 78.0 1.1e-14 NP_031360 (OMIM: 602894) natural killer cells anti ( 148) 305 77.5 1.3e-14 XP_016874780 (OMIM: 602894) PREDICTED: natural kil ( 179) 305 77.6 1.5e-14 XP_016874778 (OMIM: 602894) PREDICTED: natural kil ( 188) 291 74.4 1.4e-13 XP_016874776 (OMIM: 602894) PREDICTED: natural kil ( 219) 291 74.5 1.5e-13 XP_016874777 (OMIM: 602894) PREDICTED: natural kil ( 189) 288 73.8 2.2e-13 XP_016874775 (OMIM: 602894) PREDICTED: natural kil ( 220) 288 73.8 2.4e-13 XP_016874774 (OMIM: 602894) PREDICTED: natural kil ( 220) 288 73.8 2.4e-13 XP_011518952 (OMIM: 602894) PREDICTED: natural kil ( 220) 288 73.8 2.4e-13 XP_016874885 (OMIM: 606783) PREDICTED: C-type lect ( 173) 285 73.0 3.3e-13 NP_001092901 (OMIM: 606783) C-type lectin domain f ( 196) 285 73.1 3.6e-13 XP_011518987 (OMIM: 606783) PREDICTED: C-type lect ( 196) 285 73.1 3.6e-13 NP_057593 (OMIM: 606783) C-type lectin domain fami ( 229) 285 73.1 4e-13 XP_016874884 (OMIM: 606783) PREDICTED: C-type lect ( 229) 285 73.1 4e-13 XP_005253439 (OMIM: 606783) PREDICTED: C-type lect ( 229) 285 73.1 4e-13 NP_002534 (OMIM: 602601,608446) oxidized low-densi ( 273) 284 73.0 5.4e-13 XP_016874779 (OMIM: 602894) PREDICTED: natural kil ( 185) 280 71.9 7.6e-13 XP_006719130 (OMIM: 602894) PREDICTED: natural kil ( 185) 280 71.9 7.6e-13 XP_011518953 (OMIM: 602894) PREDICTED: natural kil ( 186) 280 71.9 7.6e-13 NP_997228 (OMIM: 612252) C-type lectin domain fami ( 241) 276 71.1 1.7e-12 NP_001138379 (OMIM: 605872) C-type lectin domain f ( 332) 268 69.4 7.7e-12 NP_001138378 (OMIM: 605872) C-type lectin domain f ( 263) 265 68.7 1e-11 XP_005272529 (OMIM: 604672,607948,609423,614371) P ( 266) 264 68.4 1.2e-11 XP_006722677 (OMIM: 605872) PREDICTED: C-type lect ( 343) 265 68.8 1.3e-11 NP_001138376 (OMIM: 605872) C-type lectin domain f ( 348) 265 68.8 1.3e-11 NP_001138381 (OMIM: 605872) C-type lectin domain f ( 353) 265 68.8 1.3e-11 XP_006722675 (OMIM: 605872) PREDICTED: C-type lect ( 371) 265 68.8 1.3e-11 XP_006722676 (OMIM: 605872) PREDICTED: C-type lect ( 371) 265 68.8 1.3e-11 XP_016874174 (OMIM: 604874) PREDICTED: killer cell ( 199) 262 67.9 1.3e-11 XP_016874172 (OMIM: 604874) PREDICTED: killer cell ( 199) 262 67.9 1.3e-11 XP_016874173 (OMIM: 604874) PREDICTED: killer cell ( 199) 262 67.9 1.3e-11 XP_016874171 (OMIM: 604874) PREDICTED: killer cell ( 199) 262 67.9 1.3e-11 NP_001138377 (OMIM: 605872) C-type lectin domain f ( 375) 265 68.8 1.4e-11 NP_001138382 (OMIM: 605872) C-type lectin domain f ( 376) 265 68.8 1.4e-11 XP_006722674 (OMIM: 605872) PREDICTED: C-type lect ( 398) 265 68.8 1.4e-11 NP_055072 (OMIM: 605872) C-type lectin domain fami ( 399) 265 68.8 1.4e-11 NP_001138371 (OMIM: 604672,607948,609423,614371) C ( 243) 261 67.7 1.8e-11 NP_001138365 (OMIM: 604672,607948,609423,614371) C ( 268) 261 67.8 2e-11 NP_001138367 (OMIM: 604672,607948,609423,614371) C ( 312) 261 67.8 2.2e-11 NP_001138366 (OMIM: 604672,607948,609423,614371) C ( 360) 261 67.9 2.5e-11 NP_001138368 (OMIM: 604672,607948,609423,614371) C ( 380) 261 67.9 2.6e-11 NP_066978 (OMIM: 604672,607948,609423,614371) CD20 ( 404) 261 67.9 2.7e-11 NP_005801 (OMIM: 604874) killer cell lectin-like r ( 189) 257 66.7 2.8e-11 NP_001316028 (OMIM: 604874) killer cell lectin-lik ( 195) 257 66.7 2.9e-11 XP_011518988 (OMIM: 606783) PREDICTED: C-type lect ( 189) 254 66.1 4.6e-11 NP_001284678 (OMIM: 606782) C-type lectin domain f ( 188) 251 65.4 7.3e-11 NP_002250 (OMIM: 161555) NKG2-A/NKG2-B type II int ( 233) 252 65.7 7.3e-11 NP_998823 (OMIM: 161555) NKG2-A/NKG2-B type II int ( 233) 252 65.7 7.3e-11 >>NP_031386 (OMIM: 611817) NKG2-D type II integral membr (216 aa) initn: 1544 init1: 1544 opt: 1544 Z-score: 1898.5 bits: 358.4 E(85289): 5.2e-99 Smith-Waterman score: 1544; 99.5% identity (100.0% similar) in 216 aa overlap (1-216:1-216) 10 20 30 40 50 60 pF1KE1 MGWIRGRRSRHSWEMSEFHNYNLDLKKSDFSTRWQKQRCPVVKSKCRENASPFFFCCFIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 MGWIRGRRSRHSWEMSEFHNYNLDLKKSDFSTRWQKQRCPVVKSKCRENASPFFFCCFIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VAMGIRFIIMVAIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQFFDESKNW :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: NP_031 VAMGIRFIIMVTIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQFFDESKNW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 YESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSILSPNLLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_031 YESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSILSPNLLT 130 140 150 160 170 180 190 200 210 pF1KE1 IIEMQKGDCALYASSFKGYIENCSTPNTYICMQRTV :::::::::::::::::::::::::::::::::::: NP_031 IIEMQKGDCALYASSFKGYIENCSTPNTYICMQRTV 190 200 210 >>NP_001107868 (OMIM: 602894) natural killer cells antig (179 aa) initn: 221 init1: 200 opt: 307 Z-score: 384.9 bits: 78.0 E(85289): 1.1e-14 Smith-Waterman score: 308; 28.4% identity (60.9% similar) in 169 aa overlap (58-216:11-179) 30 40 50 60 70 80 pF1KE1 SDFSTRWQKQRCPVVKSKCRENASPFFFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEV .:. ..:: . ..: . .. ::. . . NP_001 MAVFKTTLWRLISGTLGIICLSLMATLGILLKNSFTKLSI 10 20 30 40 90 100 110 120 130 pF1KE1 QIPLT---------ESYCGPCPKNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVY . .: .: : : ..:. :. ::: . .:.:.: ::. : ::..:::.. NP_001 EPAFTPGPNIELQKDSDCCSCQEKWVGYRCNCYFISSEQKTWNESRHLCASQKSSLLQLQ 50 60 70 80 90 100 140 150 160 170 180 190 pF1KE1 SKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSILSPNLLTIIE-MQKGDCALYASSFK . .. :... ....:.:: . . .: ::.:: :: :. .: .. .: : . . NP_001 NTDELDFMSSSQQFYWIGLSYSEEHTAWLWENGSALSQYLFPSFETFNTKNCIAYNPNGN 110 120 130 140 150 160 200 210 pF1KE1 GYIENCSTPNTYICMQRTV . :.: : ::: :. . NP_001 ALDESCEDKNRYICKQQLI 170 >>NP_002253 (OMIM: 602894) natural killer cells antigen (179 aa) initn: 221 init1: 200 opt: 307 Z-score: 384.9 bits: 78.0 E(85289): 1.1e-14 Smith-Waterman score: 308; 28.4% identity (60.9% similar) in 169 aa overlap (58-216:11-179) 30 40 50 60 70 80 pF1KE1 SDFSTRWQKQRCPVVKSKCRENASPFFFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEV .:. ..:: . ..: . .. ::. . . NP_002 MAVFKTTLWRLISGTLGIICLSLMATLGILLKNSFTKLSI 10 20 30 40 90 100 110 120 130 pF1KE1 QIPLT---------ESYCGPCPKNWICYKNNCYQFFDESKNWYESQASCMSQNASLLKVY . .: .: : : ..:. :. ::: . .:.:.: ::. : ::..:::.. NP_002 EPAFTPGPNIELQKDSDCCSCQEKWVGYRCNCYFISSEQKTWNESRHLCASQKSSLLQLQ 50 60 70 80 90 100 140 150 160 170 180 190 pF1KE1 SKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSILSPNLLTIIE-MQKGDCALYASSFK . .. :... ....:.:: . . .: ::.:: :: :. .: .. .: : . . NP_002 NTDELDFMSSSQQFYWIGLSYSEEHTAWLWENGSALSQYLFPSFETFNTKNCIAYNPNGN 110 120 130 140 150 160 200 210 pF1KE1 GYIENCSTPNTYICMQRTV . :.: : ::: :. . NP_002 ALDESCEDKNRYICKQQLI 170 >>NP_031360 (OMIM: 602894) natural killer cells antigen (148 aa) initn: 221 init1: 200 opt: 305 Z-score: 383.6 bits: 77.5 E(85289): 1.3e-14 Smith-Waterman score: 305; 32.8% identity (63.4% similar) in 134 aa overlap (84-216:18-148) 60 70 80 90 100 110 pF1KE1 FFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQF : :.: .: : : ..:. :. ::: . NP_031 MAAFTKLSIEPAFTPGPNIELQ---KDSDCCSCQEKWVGYRCNCYFI 10 20 30 40 120 130 140 150 160 170 pF1KE1 FDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSI .:.:.: ::. : ::..:::.. . .. :... ....:.:: . . .: ::.:: NP_031 SSEQKTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGLSYSEEHTAWLWENGSA 50 60 70 80 90 100 180 190 200 210 pF1KE1 LSPNLLTIIE-MQKGDCALYASSFKGYIENCSTPNTYICMQRTV :: :. .: .. .: : . .. :.: : ::: :. . NP_031 LSQYLFPSFETFNTKNCIAYNPNGNALDESCEDKNRYICKQQLI 110 120 130 140 >>XP_016874780 (OMIM: 602894) PREDICTED: natural killer (179 aa) initn: 221 init1: 200 opt: 305 Z-score: 382.5 bits: 77.6 E(85289): 1.5e-14 Smith-Waterman score: 305; 32.8% identity (63.4% similar) in 134 aa overlap (84-216:49-179) 60 70 80 90 100 110 pF1KE1 FFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQF : :.: .: : : ..:. :. ::: . XP_016 ICLSLMSTLGILLKNSFTKLSIEPAFTPGPNIELQ---KDSDCCSCQEKWVGYRCNCYFI 20 30 40 50 60 70 120 130 140 150 160 170 pF1KE1 FDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSI .:.:.: ::. : ::..:::.. . .. :... ....:.:: . . .: ::.:: XP_016 SSEQKTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGLSYSEEHTAWLWENGSA 80 90 100 110 120 130 180 190 200 210 pF1KE1 LSPNLLTIIE-MQKGDCALYASSFKGYIENCSTPNTYICMQRTV :: :. .: .. .: : . .. :.: : ::: :. . XP_016 LSQYLFPSFETFNTKNCIAYNPNGNALDESCEDKNRYICKQQLI 140 150 160 170 >>XP_016874778 (OMIM: 602894) PREDICTED: natural killer (188 aa) initn: 245 init1: 200 opt: 291 Z-score: 365.0 bits: 74.4 E(85289): 1.4e-13 Smith-Waterman score: 291; 32.8% identity (63.4% similar) in 131 aa overlap (84-213:18-145) 60 70 80 90 100 110 pF1KE1 FFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQF : :.: .: : : ..:. :. ::: . XP_016 MAAFTKLSIEPAFTPGPNIELQ---KDSDCCSCQEKWVGYRCNCYFI 10 20 30 40 120 130 140 150 160 170 pF1KE1 FDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSI .:.:.: ::. : ::..:::.. . .. :... ....:.:: . . .: ::.:: XP_016 SSEQKTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGLSYSEEHTAWLWENGSA 50 60 70 80 90 100 180 190 200 210 pF1KE1 LSPNLLTIIE-MQKGDCALYASSFKGYIENCSTPNTYICMQRTV :: :. .: .. .: : . .. :.: : :: .: XP_016 LSQYLFPSFETFNTKNCIAYNPNGNALDESCEDKNRYIFLQGWRSLRKLTVMTEGKANTS 110 120 130 140 150 160 XP_016 LYAWQQKGDVLSKRKNTLLLNHQI 170 180 >>XP_016874776 (OMIM: 602894) PREDICTED: natural killer (219 aa) initn: 230 init1: 200 opt: 291 Z-score: 364.1 bits: 74.5 E(85289): 1.5e-13 Smith-Waterman score: 291; 32.8% identity (63.4% similar) in 131 aa overlap (84-213:49-176) 60 70 80 90 100 110 pF1KE1 FFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQF : :.: .: : : ..:. :. ::: . XP_016 ICLSLMSTLGILLKNSFTKLSIEPAFTPGPNIELQ---KDSDCCSCQEKWVGYRCNCYFI 20 30 40 50 60 70 120 130 140 150 160 170 pF1KE1 FDESKNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSI .:.:.: ::. : ::..:::.. . .. :... ....:.:: . . .: ::.:: XP_016 SSEQKTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGLSYSEEHTAWLWENGSA 80 90 100 110 120 130 180 190 200 210 pF1KE1 LSPNLLTIIE-MQKGDCALYASSFKGYIENCSTPNTYICMQRTV :: :. .: .. .: : . .. :.: : :: .: XP_016 LSQYLFPSFETFNTKNCIAYNPNGNALDESCEDKNRYIFLQGWRSLRKLTVMTEGKANTS 140 150 160 170 180 190 XP_016 LYAWQQKGDVLSKRKNTLLLNHQI 200 210 >>XP_016874777 (OMIM: 602894) PREDICTED: natural killer (189 aa) initn: 240 init1: 110 opt: 288 Z-score: 361.3 bits: 73.8 E(85289): 2.2e-13 Smith-Waterman score: 288; 33.3% identity (63.6% similar) in 132 aa overlap (84-213:18-146) 60 70 80 90 100 110 pF1KE1 FFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQF : :.: .: : : ..:. :. ::: . XP_016 MAAFTKLSIEPAFTPGPNIELQ---KDSDCCSCQEKWVGYRCNCYFI 10 20 30 40 120 130 140 150 160 170 pF1KE1 FDESKNWYESQASCMSQNASLLKVYSKED-QDLLKLVKSYHWMGLVHIPTNGSWQWEDGS .:.:.: ::. : ::..:::.. . .. ::... ....:.:: . . .: ::.:: XP_016 SSEQKTWNESRHLCASQKSSLLQLQNTDELQDFMSSSQQFYWIGLSYSEEHTAWLWENGS 50 60 70 80 90 100 180 190 200 210 pF1KE1 ILSPNLLTIIE-MQKGDCALYASSFKGYIENCSTPNTYICMQRTV :: :. .: .. .: : . .. :.: : :: .: XP_016 ALSQYLFPSFETFNTKNCIAYNPNGNALDESCEDKNRYIFLQGWRSLRKLTVMTEGKANT 110 120 130 140 150 160 XP_016 SLYAWQQKGDVLSKRKNTLLLNHQI 170 180 >>XP_016874775 (OMIM: 602894) PREDICTED: natural killer (220 aa) initn: 225 init1: 110 opt: 288 Z-score: 360.4 bits: 73.8 E(85289): 2.4e-13 Smith-Waterman score: 288; 33.3% identity (63.6% similar) in 132 aa overlap (84-213:49-177) 60 70 80 90 100 110 pF1KE1 FFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQF : :.: .: : : ..:. :. ::: . XP_016 ICLSLMSTLGILLKNSFTKLSIEPAFTPGPNIELQ---KDSDCCSCQEKWVGYRCNCYFI 20 30 40 50 60 70 120 130 140 150 160 170 pF1KE1 FDESKNWYESQASCMSQNASLLKVYSKED-QDLLKLVKSYHWMGLVHIPTNGSWQWEDGS .:.:.: ::. : ::..:::.. . .. ::... ....:.:: . . .: ::.:: XP_016 SSEQKTWNESRHLCASQKSSLLQLQNTDELQDFMSSSQQFYWIGLSYSEEHTAWLWENGS 80 90 100 110 120 130 180 190 200 210 pF1KE1 ILSPNLLTIIE-MQKGDCALYASSFKGYIENCSTPNTYICMQRTV :: :. .: .. .: : . .. :.: : :: .: XP_016 ALSQYLFPSFETFNTKNCIAYNPNGNALDESCEDKNRYIFLQGWRSLRKLTVMTEGKANT 140 150 160 170 180 190 XP_016 SLYAWQQKGDVLSKRKNTLLLNHQI 200 210 220 >>XP_016874774 (OMIM: 602894) PREDICTED: natural killer (220 aa) initn: 225 init1: 110 opt: 288 Z-score: 360.4 bits: 73.8 E(85289): 2.4e-13 Smith-Waterman score: 288; 33.3% identity (63.6% similar) in 132 aa overlap (84-213:49-177) 60 70 80 90 100 110 pF1KE1 FFCCFIAVAMGIRFIIMVAIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQF : :.: .: : : ..:. :. ::: . XP_016 ICLSLMSTLGILLKNSFTKLSIEPAFTPGPNIELQ---KDSDCCSCQEKWVGYRCNCYFI 20 30 40 50 60 70 120 130 140 150 160 170 pF1KE1 FDESKNWYESQASCMSQNASLLKVYSKED-QDLLKLVKSYHWMGLVHIPTNGSWQWEDGS .:.:.: ::. : ::..:::.. . .. ::... ....:.:: . . .: ::.:: XP_016 SSEQKTWNESRHLCASQKSSLLQLQNTDELQDFMSSSQQFYWIGLSYSEEHTAWLWENGS 80 90 100 110 120 130 180 190 200 210 pF1KE1 ILSPNLLTIIE-MQKGDCALYASSFKGYIENCSTPNTYICMQRTV :: :. .: .. .: : . .. :.: : :: .: XP_016 ALSQYLFPSFETFNTKNCIAYNPNGNALDESCEDKNRYIFLQGWRSLRKLTVMTEGKANT 140 150 160 170 180 190 XP_016 SLYAWQQKGDVLSKRKNTLLLNHQI 200 210 220 216 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 14:56:56 2016 done: Sun Nov 6 14:56:57 2016 Total Scan time: 4.560 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]