(Circular) (Six-base) MAPSORT of: pFN21AE5157.seq Check: 6309 from: 1 to: 5083 pFN21AE5157 5083 bp With 182 enzymes: SgfI * January 30, 2014 17:13 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2893 278 Size: 53 83 186 936 1357 2468 Fragments arranged by size: 2468 1357 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2426 1937 Size: 489 4594 Acc65I G'GTAC_C Cuts at: 2404 2404 Size: 5083 AclI AA'CG_TT Cuts at: 1563 3210 3583 1563 Size: 1647 373 3063 Fragments arranged by size: 3063 1647 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2200 2330 3146 4530 4798 1632 Size: 568 130 816 1384 268 1917 Fragments arranged by size: 1917 1384 816 568 268 130 AfeI AGC'GCT Cuts at: 2041 2041 Size: 5083 AflII C'TTAA_G Cuts at: 820 1017 2240 820 Size: 197 1223 3663 Fragments arranged by size: 3663 1223 197 AflIII A'CryG_T Cuts at: 1203 3982 4959 1203 Size: 2779 977 1327 Fragments arranged by size: 2779 1327 977 AgeI A'CCGG_T Cuts at: 3914 3914 Size: 5083 AhdI GACnn_n'nnGTC Cuts at: 3812 3812 Size: 5083 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5083 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5083 AlwNI CAG_nnn'CTG Cuts at: 2826 4398 2826 Size: 1572 3511 ApaLI G'TGCA_C Cuts at: 3140 4296 3140 Size: 1156 3927 ApoI r'AATT_y Cuts at: 1493 2392 2618 2770 4879 1493 Size: 899 226 152 2109 1697 Fragments arranged by size: 2109 1697 899 226 152 AseI AT'TA_AT Cuts at: 160 1032 3637 160 Size: 872 2605 1606 Fragments arranged by size: 2605 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5083 AvaI C'yCGr_G Cuts at: 1870 1943 2121 2408 1870 Size: 73 178 287 4545 Fragments arranged by size: 4545 287 178 73 BamHI G'GATC_C Cuts at: 2278 2413 2780 2278 Size: 135 367 4581 Fragments arranged by size: 4581 367 135 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2404 3859 618 Size: 325 217 627 617 1455 1842 Fragments arranged by size: 1842 1455 627 617 325 217 BanII G_rGCy'C Cuts at: 1391 2402 1391 Size: 1011 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4112 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3274 3308 1903 Size: 34 1337 34 3678 Fragments arranged by size: 3678 1337 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2975 4185 2975 Size: 1210 3873 BclI T'GATC_A Cuts at: 1548 1548 Size: 5083 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2301 3694 136 Size: 107 122 71 631 605 629 1393 1525 Fragments arranged by size: 1525 1393 631 629 605 122 107 71 BglII A'GATC_T Cuts at: 5078 5078 Size: 5083 BlpI GC'TnA_GC Cuts at: 2043 2500 2043 Size: 457 4626 Bme1580I G_kGCm'C Cuts at: 1790 3144 4300 1790 Size: 1354 1156 2573 Fragments arranged by size: 2573 1354 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5083 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2814 3772 442 Size: 416 53 83 399 24 1397 958 1753 Fragments arranged by size: 1753 1397 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5083 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3743 1239 Size: 2504 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2056 3208 4073 4371 2056 Size: 1152 865 298 2768 Fragments arranged by size: 2768 1152 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3746 882 Size: 617 2247 2219 Fragments arranged by size: 2247 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2874 493 Size: 711 1670 2702 Fragments arranged by size: 2702 1670 711 BsaBI GATnn'nnATC Cuts at: 5077 5077 Size: 5083 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2009 2890 3272 3907 Size: 53 83 186 936 476 881 382 635 Cuts at: 3907 275 Size: 1451 Fragments arranged by size: 1451 936 881 635 476 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3516 3914 4188 4335 4746 3516 Size: 398 274 147 411 3853 Fragments arranged by size: 3853 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4858 Fragments arranged by size: 4858 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5083 BseYI C'CCAG_C Cuts at: 4286 4782 4286 Size: 496 4587 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4510 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2533 3294 4322 1540 Size: 275 186 532 761 1028 2301 Fragments arranged by size: 2301 1028 761 532 275 186 BsiHKAI G_wGCw'C Cuts at: 3144 3229 4300 3144 Size: 85 1071 3927 Fragments arranged by size: 3927 1071 85 BsmI GAATG_Cn' Cuts at: 2104 2594 2687 2104 Size: 490 93 4500 Fragments arranged by size: 4500 490 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2402 3144 3229 4300 1391 Size: 399 612 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 612 399 85 BspEI T'CCGG_A Cuts at: 4746 4746 Size: 5083 BspHI T'CATG_A Cuts at: 2972 4702 2972 Size: 1730 3353 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2438 844 Size: 1594 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2970 1394 Size: 429 1147 3507 Fragments arranged by size: 3507 1147 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3578 3752 65 Size: 1183 2330 174 1396 Fragments arranged by size: 2330 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2026 3727 3914 1700 Size: 110 216 1701 187 2869 Fragments arranged by size: 2869 1701 216 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5083 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5083 BssSI C'ACGA_G Cuts at: 3143 4155 3143 Size: 1012 4071 BstAPI GCAn_nnn'nTGC Cuts at: 794 2164 794 Size: 1370 3713 BstBI TT'CG_AA Cuts at: 3887 3887 Size: 5083 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5083 BstYI r'GATC_y Cuts at: 1972 2184 2278 2413 2780 3165 3182 4634 4720 Size: 212 94 135 367 385 17 1452 86 Cuts at: 4720 4732 5078 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 385 367 346 212 135 94 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2172 2347 513 Size: 552 939 168 175 3249 Fragments arranged by size: 3249 939 552 175 168 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4344 Fragments arranged by size: 4344 683 56 BtsI GCAGTG_nn' Cuts at: 2109 2599 3393 3413 2109 Size: 490 794 20 3779 Fragments arranged by size: 3779 794 490 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5083 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5048 DraI TTT'AAA Cuts at: 2387 2387 Size: 5083 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4090 809 Size: 507 2774 1802 Fragments arranged by size: 2774 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2175 2373 2530 Size: 54 1425 50 275 18 345 198 157 Cuts at: 2530 3419 5048 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 345 275 198 157 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2530 1537 Size: 275 718 4090 Fragments arranged by size: 4090 718 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3013 1353 Size: 1660 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2002 2077 3670 4044 4190 387 Size: 1064 138 413 75 1593 374 146 1280 Fragments arranged by size: 1593 1280 1064 413 374 146 138 75 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2200 2330 3146 3743 4530 4798 1239 Size: 393 568 130 816 597 787 268 1524 Fragments arranged by size: 1524 816 787 597 568 393 268 130 EcoNI CCTnn'n_nnAGG Cuts at: 2066 2066 Size: 5083 EcoRI G'AATT_C Cuts at: 2392 2770 2392 Size: 378 4705 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2255 2255 Size: 5083 FspI TGC'GCA Cuts at: 2108 3589 2108 Size: 1481 3602 FspAI rTGC'GCAy Cuts at: 2108 2108 Size: 5083 HaeII r_GCGC'y Cuts at: 1678 2043 2318 4230 1678 Size: 365 275 1912 2531 Fragments arranged by size: 2531 1912 365 275 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3724 3756 3798 3830 1373 Size: 32 135 32 2152 32 42 32 2626 Fragments arranged by size: 2626 2152 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2427 2673 669 Size: 988 281 489 246 3079 Fragments arranged by size: 3079 988 489 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5083 HpaI GTT'AAC Cuts at: 2673 2673 Size: 5083 KpnI G_GTAC'C Cuts at: 2408 2408 Size: 5083 MfeI C'AATT_G Cuts at: 2682 2682 Size: 5083 MluI A'CGCG_T Cuts at: 4959 4959 Size: 5083 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4197 4381 1305 Size: 2892 184 2007 Fragments arranged by size: 2892 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2177 10 Size: 54 1425 343 345 2916 Fragments arranged by size: 2916 1425 345 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3041 3400 3559 518 Size: 648 1875 359 159 2042 Fragments arranged by size: 2042 1875 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2220 2499 3176 4324 4569 1606 Size: 614 279 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 614 279 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2347 513 Size: 552 939 343 3249 Fragments arranged by size: 3249 939 552 343 NdeI CA'TA_TG Cuts at: 387 387 Size: 5083 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5083 NotI GC'GGCC_GC Cuts at: 2530 2530 Size: 5083 NspI r_CATG'y Cuts at: 1132 1229 2441 3986 1132 Size: 97 1212 1545 2229 Fragments arranged by size: 2229 1545 1212 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5083 PciI A'CATG_T Cuts at: 3982 3982 Size: 5083 PflMI CCAn_nnn'nTGG Cuts at: 1108 2348 1108 Size: 1240 3843 PmeI GTTT'AAAC Cuts at: 2387 2387 Size: 5083 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3152 3184 4665 4697 3152 Size: 32 1481 32 3538 Fragments arranged by size: 3538 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5083 PsiI TTA'TAA Cuts at: 2653 2653 Size: 5083 PstI C_TGCA'G Cuts at: 830 2435 830 Size: 1605 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5083 PvuII CAG'CTG Cuts at: 2220 2220 Size: 5083 SalI G'TCGA_C Cuts at: 1936 2425 1936 Size: 489 4594 SbfI CC_TGCA'GG Cuts at: 2435 2435 Size: 5083 ScaI AGT'ACT Cuts at: 3331 5043 3331 Size: 1712 3371 SfcI C'TryA_G Cuts at: 826 1045 2431 3566 4247 4438 826 Size: 219 1386 1135 681 191 1471 Fragments arranged by size: 1471 1386 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5083 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5083 SmaI CCC'GGG Cuts at: 1872 2410 1872 Size: 538 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2035 2240 3187 4088 4350 820 Size: 197 926 92 205 947 901 262 1553 Fragments arranged by size: 1553 947 926 901 262 205 197 92 SnaBI TAC'GTA Cuts at: 493 2874 493 Size: 2381 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5083 SphI G_CATG'C Cuts at: 1132 2441 1132 Size: 1309 3774 SspI AAT'ATT Cuts at: 5 52 3007 5 Size: 47 2955 2081 Fragments arranged by size: 2955 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5083 StyI C'CwwG_G Cuts at: 513 1065 2004 2347 2522 513 Size: 552 939 343 175 3074 Fragments arranged by size: 3074 939 552 343 175 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3110 3127 3280 3465 3910 325 Size: 1255 1530 17 153 185 445 1498 Fragments arranged by size: 1530 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3329 5041 96 Size: 274 80 33 51 1443 1352 1712 138 Fragments arranged by size: 1712 1443 1352 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5043 5075 5043 Size: 32 5051 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5083 XbaI T'CTAG_A Cuts at: 2419 2419 Size: 5083 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5083 XmaI C'CCGG_G Cuts at: 1870 2408 1870 Size: 538 4545 XmnI GAAnn'nnTTC Cuts at: 3212 3212 Size: 5083 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2891 276 Size: 53 83 186 936 1357 2468 Fragments arranged by size: 2468 1357 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FalI FspI FspAI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoO109I EcoRV FseI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI