FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6283, 268 aa 1>>>pF1KE6283 268 - 268 aa - 268 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.3376+/-0.000833; mu= -7.2496+/- 0.050 mean_var=247.2783+/-50.913, 0's: 0 Z-trim(116.3): 8 B-trim: 277 in 1/52 Lambda= 0.081561 statistics sampled from 16879 (16885) to 16879 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.519), width: 16 Scan time: 2.760 The best scores are: opt bits E(32554) CCDS8565.1 CDCA3 gene_id:83461|Hs108|chr12 ( 268) 1812 225.2 3.8e-59 CCDS73428.1 CDCA3 gene_id:83461|Hs108|chr12 ( 182) 1232 156.8 9.7e-39 CCDS76513.1 CDCA3 gene_id:83461|Hs108|chr12 ( 219) 1229 156.5 1.4e-38 CCDS76512.1 CDCA3 gene_id:83461|Hs108|chr12 ( 243) 1082 139.3 2.5e-33 >>CCDS8565.1 CDCA3 gene_id:83461|Hs108|chr12 (268 aa) initn: 1812 init1: 1812 opt: 1812 Z-score: 1175.3 bits: 225.2 E(32554): 3.8e-59 Smith-Waterman score: 1812; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268) 10 20 30 40 50 60 pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG 190 200 210 220 230 240 250 260 pF1KE6 RLLKTGGRAWEQGQDHDKENQHFPLVES :::::::::::::::::::::::::::: CCDS85 RLLKTGGRAWEQGQDHDKENQHFPLVES 250 260 >>CCDS73428.1 CDCA3 gene_id:83461|Hs108|chr12 (182 aa) initn: 1232 init1: 1232 opt: 1232 Z-score: 809.0 bits: 156.8 E(32554): 9.7e-39 Smith-Waterman score: 1232; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG :: CCDS73 SG >>CCDS76513.1 CDCA3 gene_id:83461|Hs108|chr12 (219 aa) initn: 1307 init1: 1229 opt: 1229 Z-score: 805.9 bits: 156.5 E(32554): 1.4e-38 Smith-Waterman score: 1229; 99.5% identity (100.0% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG :.: CCDS76 SASSVPDFEEAVPGTCGHSHPVSCDSQAAHPVIVAREDA 190 200 210 >>CCDS76512.1 CDCA3 gene_id:83461|Hs108|chr12 (243 aa) initn: 1081 init1: 1081 opt: 1082 Z-score: 711.7 bits: 139.3 E(32554): 2.5e-33 Smith-Waterman score: 1584; 90.7% identity (90.7% similar) in 268 aa overlap (1-268:1-243) 10 20 30 40 50 60 pF1KE6 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 MGSAKSVPVTPARPPPHNKHLARVADPRSPSAGILRTPIQVESSPQPGLPAGEQLEGLKH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AQDSDPRSPTLGIARTPMKTSSGDPPSPLVKQLSEVFETEDSKSNLPPEPVLPPEAPLSS ::::::::::::::::::::::: :::::::::::: CCDS76 AQDSDPRSPTLGIARTPMKTSSG-------------------------EPVLPPEAPLSS 70 80 90 130 140 150 160 170 180 pF1KE6 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 ELDLPLGTQLSVEEQMPPWNQTEFPSKQVFSKEEARQPTETPVASQSSDKPSRDPETPRS 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE6 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 SGSMRNRWKPNSSKVLGRSPLTILQDDNSPGTLTLRQGKRPSPLSENVSELKEGAILGTG 160 170 180 190 200 210 250 260 pF1KE6 RLLKTGGRAWEQGQDHDKENQHFPLVES :::::::::::::::::::::::::::: CCDS76 RLLKTGGRAWEQGQDHDKENQHFPLVES 220 230 240 268 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:45:54 2016 done: Tue Nov 8 11:45:54 2016 Total Scan time: 2.760 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]