Result of FASTA (omim) for
pFN21AE5415
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5415, 352 aa
1>>>pF1KE5415 352 - 352 aa - 352 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8532+/-0.000356; mu= 0.2384+/- 0.022
mean_var=174.0325+/-34.332, 0's: 0 Z-trim(119.5): 7 B-trim: 394 in 1/60
Lambda= 0.097221
statistics sampled from 33686 (33693) to 33686 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.395), width: 16
Scan time: 6.710
The best scores are: opt bits E(85289)
NP_001124334 (OMIM: 603070) RAD51-associated prote ( 352) 2265 329.5 7e-90
NP_006470 (OMIM: 603070) RAD51-associated protein ( 335) 1690 248.8 1.3e-65
XP_005245510 (OMIM: 611912) PREDICTED: nuclear ubi ( 242) 216 42.0 0.0017
>>NP_001124334 (OMIM: 603070) RAD51-associated protein 1 (352 aa)
initn: 2265 init1: 2265 opt: 2265 Z-score: 1734.6 bits: 329.5 E(85289): 7e-90
Smith-Waterman score: 2265; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)
10 20 30 40 50 60
pF1KE5 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK
250 260 270 280 290 300
310 320 330 340 350
pF1KE5 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
310 320 330 340 350
>>NP_006470 (OMIM: 603070) RAD51-associated protein 1 is (335 aa)
initn: 1687 init1: 1687 opt: 1690 Z-score: 1299.1 bits: 248.8 E(85289): 1.3e-65
Smith-Waterman score: 2105; 95.2% identity (95.2% similar) in 352 aa overlap (1-352:1-335)
10 20 30 40 50 60
pF1KE5 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS
:::::::::: :::::::::::::::::::::::::::::::::
NP_006 PVQEKTPKKR-----------------MALDDKLYQRDLEVALALSVKELPTVTTNVQNS
70 80 90 100
130 140 150 160 170 180
pF1KE5 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE5 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE5 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK
230 240 250 260 270 280
310 320 330 340 350
pF1KE5 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
290 300 310 320 330
>>XP_005245510 (OMIM: 611912) PREDICTED: nuclear ubiquit (242 aa)
initn: 254 init1: 157 opt: 216 Z-score: 184.0 bits: 42.0 E(85289): 0.0017
Smith-Waterman score: 231; 29.5% identity (50.0% similar) in 322 aa overlap (1-316:1-233)
10 20 30 40 50
pF1KE5 MVRPVRHKKPVNYSQFDHSD-SDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEE
: ::::..: :.::::..:: .:.:. . : .:: :..:.: :.
XP_005 MSRPVRNRKVVDYSQFQESDDADEDYGRDSGPPTKKIRSSPREAKN--------------
10 20 30 40
60 70 80 90 100 110
pF1KE5 IPVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQN
:.: . : :.: : .
XP_005 --------KRR--------------------SGKNSQEDSE------------------D
50 60
120 130 140 150 160 170
pF1KE5 SQDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQ
:.::... : . . : : : : ..: .:. .:.::::::..
XP_005 SEDKDVK--------TKKDDSH-----SAEDSED-----EKEDHKNVRQQRQAASKAASK
70 80 90 100
180 190 200 210 220 230
pF1KE5 QRKILLEGSDGDSANDTEPDFAP-GEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVK
::..:.: :. .. : : :: :.: .: :: .:.: :.. :.: .:: ::
XP_005 QREMLMEDV-GSEEEQEEEDEAPFQENSGSDEDFLMEDDDDSDYGSSKKK----NKKMVK
110 120 130 140 150
240 250 260 270 280 290
pF1KE5 VKSPVEKKEKK-SKSKCNALVTSVDSAPAAVKSESQ-SLPKKVSLSSDTTRKPLEI-RSP
:: :.:::: : . .: :: :. ::.... . : . :.. : .: : . :
XP_005 -KSKPERKEKKMPKPRLKATVT-----PSPVKGKGKVGRPTASKASKEKTPSPKEEDEEP
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE5 -SAESKKPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST
: :: . :: ..:...:
XP_005 ESPPEKKTSTSPPPEKSGDEGSEDEAPSGED
220 230 240
352 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 00:31:42 2016 done: Tue Nov 8 00:31:43 2016
Total Scan time: 6.710 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]