FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5415, 352 aa 1>>>pF1KE5415 352 - 352 aa - 352 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2043+/-0.000845; mu= 4.0140+/- 0.051 mean_var=155.3640+/-30.406, 0's: 0 Z-trim(111.7): 17 B-trim: 7 in 1/54 Lambda= 0.102896 statistics sampled from 12599 (12607) to 12599 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.387), width: 16 Scan time: 2.160 The best scores are: opt bits E(32554) CCDS44805.1 RAD51AP1 gene_id:10635|Hs108|chr12 ( 352) 2265 347.6 9.2e-96 CCDS8529.1 RAD51AP1 gene_id:10635|Hs108|chr12 ( 335) 1690 262.2 4.4e-70 >>CCDS44805.1 RAD51AP1 gene_id:10635|Hs108|chr12 (352 aa) initn: 2265 init1: 2265 opt: 2265 Z-score: 1832.7 bits: 347.6 E(32554): 9.2e-96 Smith-Waterman score: 2265; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352) 10 20 30 40 50 60 pF1KE5 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK 250 260 270 280 290 300 310 320 330 340 350 pF1KE5 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST 310 320 330 340 350 >>CCDS8529.1 RAD51AP1 gene_id:10635|Hs108|chr12 (335 aa) initn: 1687 init1: 1687 opt: 1690 Z-score: 1371.8 bits: 262.2 E(32554): 4.4e-70 Smith-Waterman score: 2105; 95.2% identity (95.2% similar) in 352 aa overlap (1-352:1-335) 10 20 30 40 50 60 pF1KE5 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 MVRPVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PVQEKTPKKRLPEGTFSIPASAVPCTKMALDDKLYQRDLEVALALSVKELPTVTTNVQNS :::::::::: ::::::::::::::::::::::::::::::::: CCDS85 PVQEKTPKKR-----------------MALDDKLYQRDLEVALALSVKELPTVTTNVQNS 70 80 90 100 130 140 150 160 170 180 pF1KE5 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 QDKSIEKHGSSKIETMNKSPHISNCSVASDYLDLDKITVEDDVGGVQGKRKAASKAAAQQ 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE5 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 RKILLEGSDGDSANDTEPDFAPGEDSEDDSDFCESEDNDEDFSMRKSKVKEIKKKEVKVK 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE5 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 SPVEKKEKKSKSKCNALVTSVDSAPAAVKSESQSLPKKVSLSSDTTRKPLEIRSPSAESK 230 240 250 260 270 280 310 320 330 340 350 pF1KE5 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 KPKWVPPAASGGSRSSSSPLVVVSVKSPNQSLRLGLSRLARVKPLHPNATST 290 300 310 320 330 352 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:31:41 2016 done: Tue Nov 8 00:31:42 2016 Total Scan time: 2.160 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]