FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5557, 377 aa
  1>>>pF1KE5557 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4306+/-0.000852; mu= 16.0274+/- 0.051
 mean_var=65.9196+/-13.109, 0's: 0 Z-trim(106.4): 18  B-trim: 0 in 0/49
 Lambda= 0.157967
 statistics sampled from 8964 (8977) to 8964 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.276), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS8469.1 RPUSD4 gene_id:84881|Hs108|chr11        ( 377) 2525 584.3 6.1e-167
CCDS53721.1 RPUSD4 gene_id:84881|Hs108|chr11       ( 346) 1413 330.8 1.1e-90
CCDS2586.2 RPUSD3 gene_id:285367|Hs108|chr3        ( 351)  318 81.3 1.5e-15


>>CCDS8469.1 RPUSD4 gene_id:84881|Hs108|chr11             (377 aa)
 initn: 2525 init1: 2525 opt: 2525  Z-score: 3110.6  bits: 584.3 E(32554): 6.1e-167
Smith-Waterman score: 2525; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KE5 MAAPRWSASGPWIRGNGQGCGSLFTLVSKPFCAAAAASTAINAQRLAEKLRAQKREQDTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MAAPRWSASGPWIRGNGQGCGSLFTLVSKPFCAAAAASTAINAQRLAEKLRAQKREQDTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 KEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 PGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 QVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 QVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 SVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNLVCKLPRFFVHSLHRLRLEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNLVCKLPRFFVHSLHRLRLEM
              310       320       330       340       350       360

              370       
pF1KE5 PNEDQNENNEAKCLGAQ
       :::::::::::::::::
CCDS84 PNEDQNENNEAKCLGAQ
              370       

>>CCDS53721.1 RPUSD4 gene_id:84881|Hs108|chr11            (346 aa)
 initn: 1412 init1: 1412 opt: 1413  Z-score: 1741.5  bits: 330.8 E(32554): 1.1e-90
Smith-Waterman score: 2241; 91.8% identity (91.8% similar) in 377 aa overlap (1-377:1-346)

               10        20        30        40        50        60
pF1KE5 MAAPRWSASGPWIRGNGQGCGSLFTLVSKPFCAAAAASTAINAQRLAEKLRAQKREQDTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAAPRWSASGPWIRGNGQGCGSLFTLVSKPFCAAAAASTAINAQRLAEKLRAQKREQDTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA
       ::::::::::::::::::::::::::::::                              
CCDS53 VVKKYWAITVHVPMPSAGVVDIPIVEKEAQ------------------------------
              190       200       210                              

              250       260       270       280       290       300
pF1KE5 QVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQKL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 -VAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYSDWNRLAPQKL
               220       230       240       250       260         

              310       320       330       340       350       360
pF1KE5 SVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNLVCKLPRFFVHSLHRLRLEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNLVCKLPRFFVHSLHRLRLEM
     270       280       290       300       310       320         

              370       
pF1KE5 PNEDQNENNEAKCLGAQ
       :::::::::::::::::
CCDS53 PNEDQNENNEAKCLGAQ
     330       340      

>>CCDS2586.2 RPUSD3 gene_id:285367|Hs108|chr3             (351 aa)
 initn: 289 init1:  95 opt: 318  Z-score: 392.8  bits: 81.3 E(32554): 1.5e-15
Smith-Waterman score: 374; 30.4% identity (59.2% similar) in 289 aa overlap (91-360:75-350)

               70        80        90       100       110       120
pF1KE5 KEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKALTRGILHQDKNLVVINKPYGLPVHGG
                                     :. ::  ... .   ::..::: :::: : 
CCDS25 RQPRGSCQRSGPLGDQPFAGLLPKNLSREELVDALRAAVVDRKGPLVTLNKPQGLPVTGK
           50        60        70        80        90       100    

              130       140       150       160       170          
pF1KE5 PGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWDKDMAHQVQELF----
       :: .: . .::: :.. : : . . :.. .   ::..:...:.   . : ..:. :    
CCDS25 PG-ELTLFSVLPELSQSL-GLREQELQVVRASGKESSGLVLLSSCPQTASRLQKYFTHAR
           110       120        130       140       150       160  

        180       190       200       210       220       230      
pF1KE5 RTRQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRR
       :... .  : :.:  .:  : : ..  .  .. .: .    .  .:: : :  . ::   
CCDS25 RAQRPTATYCAVTDGIPAASEGKIQAALKLEHIDGVNLTVPVK-APS-RKDILEGVK---
            170       180       190       200         210          

        240       250       260       270       280       290      
pF1KE5 SRNAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS------
             ......:...  . :::.:::.: .. ::.::. . : ::.:::: ::      
CCDS25 -----KTLSHFRVVATGSGCALVQLQPLTVFSSQLQVHMVLQL-CPVLGDHMYSARVGTV
            220       230       240       250        260       270 

                       300       310       320       330       340 
pF1KE5 ---------DWNRLAPQKLSVGTLKKLGLEQSKARYIPLHLHARQLILPALGSGKEELNL
                . :.   : :. . :..: :  :.:  .::::: ..:.::.  .    ..:
CCDS25 LGQRFLLPAENNKPQRQVLDEALLRRLHLTPSQAAQLPLHLHLHRLLLPGTRARDTPVEL
             280       290       300       310       320       330 

             350       360       370       
pF1KE5 VCKLPRFFVHSLHRLRLEMPNEDQNENNEAKCLGAQ
       .  :: .: ..:. : :..                 
CCDS25 LAPLPPYFSRTLQCLGLRLQ                
             340       350                 




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:48:16 2016 done: Tue Nov  8 01:48:17 2016
 Total Scan time:  2.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]