FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6537, 78 aa
  1>>>pF1KE6537 78 - 78 aa - 78 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1431+/-0.000563; mu= 7.4305+/- 0.034
 mean_var=147.3242+/-29.438, 0's: 0 Z-trim(119.2): 2  B-trim: 2 in 1/51
 Lambda= 0.105666
 statistics sampled from 20302 (20304) to 20302 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.9), E-opt: 0.2 (0.624), width:  16
 Scan time:  1.320

The best scores are:                                      opt bits E(32554)
CCDS8451.1 NRGN gene_id:4900|Hs108|chr11           (  78)  560 94.2 8.5e-21


>>CCDS8451.1 NRGN gene_id:4900|Hs108|chr11                (78 aa)
 initn: 560 init1: 560 opt: 560  Z-score: 486.9  bits: 94.2 E(32554): 8.5e-21
Smith-Waterman score: 560; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KE6 MDCCTENACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIKSGERGRKGPGPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MDCCTENACSKPDDDILDIPLDDPGANAAAAKIQASFRGHMARKKIKSGERGRKGPGPGG
               10        20        30        40        50        60

               70        
pF1KE6 PGGAGVARGGAGGGPSGD
       ::::::::::::::::::
CCDS84 PGGAGVARGGAGGGPSGD
               70        




78 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:12:59 2016 done: Tue Nov  8 14:13:00 2016
 Total Scan time:  1.320 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]