FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3027, 151 aa
  1>>>pF1KE3027 151 - 151 aa - 151 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8870+/-0.000304; mu= 4.9105+/- 0.019
 mean_var=105.7805+/-21.585, 0's: 0 Z-trim(120.5): 24  B-trim: 1964 in 2/53
 Lambda= 0.124701
 statistics sampled from 35692 (35716) to 35692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.419), width:  16
 Scan time:  4.860

The best scores are:                                      opt bits E(85289)
XP_011541172 (OMIM: 608621) PREDICTED: sperm surfa ( 151)  981 186.0   2e-47
NP_059121 (OMIM: 608621) sperm surface protein Sp1 ( 151)  981 186.0   2e-47


>>XP_011541172 (OMIM: 608621) PREDICTED: sperm surface p  (151 aa)
 initn: 981 init1: 981 opt: 981  Z-score: 972.2  bits: 186.0 E(85289): 2e-47
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KE3 MSIPFSNTHYRIPQGFGNLLEGLTREILREQPDNIPAFAAAYFESLLEKREKTNFDPAEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSIPFSNTHYRIPQGFGNLLEGLTREILREQPDNIPAFAAAYFESLLEKREKTNFDPAEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GSKVEDRFYNNHAFEEQEPPEKSDPKQEESQISGKEEETSVTILDSSEEDKEKEEVAAVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSKVEDRFYNNHAFEEQEPPEKSDPKQEESQISGKEEETSVTILDSSEEDKEKEEVAAVK
               70        80        90       100       110       120

              130       140       150 
pF1KE3 IQAAFRGHIAREEAKKMKTNSLQNEEKEENK
       :::::::::::::::::::::::::::::::
XP_011 IQAAFRGHIAREEAKKMKTNSLQNEEKEENK
              130       140       150 

>>NP_059121 (OMIM: 608621) sperm surface protein Sp17 [H  (151 aa)
 initn: 981 init1: 981 opt: 981  Z-score: 972.2  bits: 186.0 E(85289): 2e-47
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KE3 MSIPFSNTHYRIPQGFGNLLEGLTREILREQPDNIPAFAAAYFESLLEKREKTNFDPAEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 MSIPFSNTHYRIPQGFGNLLEGLTREILREQPDNIPAFAAAYFESLLEKREKTNFDPAEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GSKVEDRFYNNHAFEEQEPPEKSDPKQEESQISGKEEETSVTILDSSEEDKEKEEVAAVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_059 GSKVEDRFYNNHAFEEQEPPEKSDPKQEESQISGKEEETSVTILDSSEEDKEKEEVAAVK
               70        80        90       100       110       120

              130       140       150 
pF1KE3 IQAAFRGHIAREEAKKMKTNSLQNEEKEENK
       :::::::::::::::::::::::::::::::
NP_059 IQAAFRGHIAREEAKKMKTNSLQNEEKEENK
              130       140       150 




151 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:58:25 2016 done: Sun Nov  6 14:58:26 2016
 Total Scan time:  4.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]