Result of FASTA (ccds) for
pFN21AE1221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1221, 243 aa
1>>>pF1KE1221 243 - 243 aa - 243 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6558+/-0.00088; mu= 3.2577+/- 0.053
mean_var=296.6925+/-61.447, 0's: 0 Z-trim(117.0): 129 B-trim: 399 in 1/52
Lambda= 0.074460
statistics sampled from 17567 (17700) to 17567 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.544), width: 16
Scan time: 2.660
The best scores are: opt bits E(32554)
CCDS8420.1 C1QTNF5 gene_id:114902|Hs108|chr11 ( 243) 1733 198.3 4e-51
CCDS3284.1 ADIPOQ gene_id:9370|Hs108|chr3 ( 244) 537 69.8 1.9e-12
CCDS227.1 C1QC gene_id:714|Hs108|chr1 ( 245) 524 68.4 5e-12
CCDS9306.1 C1QTNF9 gene_id:338872|Hs108|chr13 ( 333) 495 65.4 5.3e-11
>>CCDS8420.1 C1QTNF5 gene_id:114902|Hs108|chr11 (243 aa)
initn: 1733 init1: 1733 opt: 1733 Z-score: 1031.4 bits: 198.3 E(32554): 4e-51
Smith-Waterman score: 1733; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KE1 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQGLPGRDGRDGRDGAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQGLPGRDGRDGRDGAPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 APGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPPRSAFSAKRSESRVPPPSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 APGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPPRSAFSAKRSESRVPPPSD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 APLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASLQFDLVKNGESIASFFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 APLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASLQFDLVKNGESIASFFQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 FFGGWPKPASLSGGAMVRLEPEDQVWVQVGVGDYIGIYASIKTDSTFSGFLVYSDWHSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 FFGGWPKPASLSGGAMVRLEPEDQVWVQVGVGDYIGIYASIKTDSTFSGFLVYSDWHSSP
190 200 210 220 230 240
pF1KE1 VFA
:::
CCDS84 VFA
>>CCDS3284.1 ADIPOQ gene_id:9370|Hs108|chr3 (244 aa)
initn: 405 init1: 224 opt: 537 Z-score: 337.0 bits: 69.8 E(32554): 1.9e-12
Smith-Waterman score: 559; 43.3% identity (61.9% similar) in 247 aa overlap (6-235:7-242)
10 20 30 40 50
pF1KE1 MRPLLVLLLLGLAAGSPPLDDNKIPS-LCPGHPG-----LPGTPGHHGSQGLPGRDGRD
:::::.: : .. :. : : : . : ::: : .: :::::::
CCDS32 MLLLGAVLLLLALP-GHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRD
10 20 30 40 50
60 70 80 90 100
pF1KE1 GRDGAPGAPGEKGEGGRPGLPGPRGD------PG---PRGEAGPAGPTGPAGECSVPPRS
: .:::::: : ::: ::.:: :: ::: : : : :: . ::
CCDS32 G------TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRS
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE1 AFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASL
:::. :. : : . :. : ... :.:.:::. :::: :..::.:::: : ::: ..
CCDS32 AFSVGL-ETYVTIP-NMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDV
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE1 QFDLVKNGESIA-SFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQV-GVGDYIGIYASIK
. .: :. ... .. :. . : ::.....:: ::::.:: : :. :.::.
CCDS32 KVSLFKKDKAMLFTYDQYQENNVDQA--SGSVLLHLEVGDQVWLQVYGEGERNGLYADND
180 190 200 210 220
230 240
pF1KE1 TDSTFSGFLVYSDWHSSPVFA
.::::.:::.: :
CCDS32 NDSTFTGFLLYHDTN
230 240
>>CCDS227.1 C1QC gene_id:714|Hs108|chr1 (245 aa)
initn: 627 init1: 256 opt: 524 Z-score: 329.4 bits: 68.4 E(32554): 5e-12
Smith-Waterman score: 533; 40.7% identity (62.2% similar) in 246 aa overlap (1-235:13-245)
10 20 30 40
pF1KE1 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQGLPG
.. ::.:::: : :. :: : :::::.::. : .::::
CCDS22 MDVGPSSLPHLGLKLLLLLLLLPLR-GQANTGCYGIP----GMPGLPGAPGKDGYDGLPG
10 20 30 40 50
50 60 70 80 90 100
pF1KE1 RDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTGPAGECSVPP------
:. : . :: : ::. :.::::: : :: : : : :: : . :
CCDS22 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
60 70 80 90 100 110
110 120 130 140 150
pF1KE1 ---RSAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATV
.:.:.. : ... :: .. . :. ::.: :: ::. ::::::.:::.:::. ::.
CCDS22 QKFQSVFTVTR-QTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHAS-
120 130 140 150 160 170
160 170 180 190 200 210
pF1KE1 YRASLQFDLVKNGESIASFFQFFGGWPKPASL-SGGAMVRLEPEDQVWVQVG-VGDYIGI
. :.: : ..: ....: : : .. :::...::. ..::. :. :..::
CCDS22 HTANLCVLLYRSGVKVVTFC---GHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGI
180 190 200 210 220 230
220 230 240
pF1KE1 YASIKTDSTFSGFLVYSDWHSSPVFA
.: ::.:::::.. :
CCDS22 QGS---DSVFSGFLLFPD
240
>>CCDS9306.1 C1QTNF9 gene_id:338872|Hs108|chr13 (333 aa)
initn: 412 init1: 355 opt: 495 Z-score: 311.0 bits: 65.4 E(32554): 5.3e-11
Smith-Waterman score: 521; 39.7% identity (59.0% similar) in 239 aa overlap (15-234:95-331)
10 20 30 40
pF1KE1 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQ
::: : . :. :: : : .:..
CCDS93 GKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQGQK
70 80 90 100 110 120
50 60 70 80 90
pF1KE1 GLPGRDGRDGRDGAPGAPGEKGEGGRPGLPGPRGDPGPRGEAGPAGPTG-PA--------
: : : : .: : : : : :: :: : :::.:::::.:: : :.
CCDS93 GNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPTGPQGEPGVRGIRGWK
130 140 150 160 170 180
100 110 120 130 140
pF1KE1 ---------GECSVPPRSAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQ
:: : :.:::.. . : :: :. ::..: :: .:::...:::::.
CCDS93 GDRGEKGKIGETLVLPKSAFTVGLTVLSKFPSSDMPIKFDKILYNEFNHYDTAAGKFTCH
190 200 210 220 230 240
150 160 170 180 190 200
pF1KE1 VPGVYYFAVHATVYRASLQFDLVKNGESIASFFQFFGGWPKPASLSGGAMVRLEPEDQVW
. :::::. : ::. ..: .::::: .: . . . :: :: ...:. :.::
CCDS93 IAGVYYFTYHITVFSRNVQVSLVKNGVKILHTKDAYMSSEDQAS--GGIVLQLKLGDEVW
250 260 270 280 290 300
210 220 230 240
pF1KE1 VQVGVGD-YIGIYASIKTDSTFSGFLVYSDWHSSPVFA
.:: :. . :..:. :.::.:::..:
CCDS93 LQVTGGERFNGLFADEDDDTTFTGFLLFSSP
310 320 330
243 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:58:49 2016 done: Sun Nov 6 14:58:50 2016
Total Scan time: 2.660 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]