Result of FASTA (omim) for
pFN21AE4345
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4345, 361 aa
1>>>pF1KE4345 361 - 361 aa - 361 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0761+/-0.000393; mu= 18.0020+/- 0.024
mean_var=66.6561+/-12.955, 0's: 0 Z-trim(112.7): 30 B-trim: 178 in 1/53
Lambda= 0.157092
statistics sampled from 21731 (21746) to 21731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.255), width: 16
Scan time: 8.280
The best scores are: opt bits E(85289)
NP_000181 (OMIM: 176000,609806) porphobilinogen de ( 361) 2349 541.3 1.2e-153
XP_016873118 (OMIM: 176000,609806) PREDICTED: porp ( 344) 2242 517.0 2.4e-146
XP_005271588 (OMIM: 176000,609806) PREDICTED: porp ( 344) 2242 517.0 2.4e-146
XP_005271589 (OMIM: 176000,609806) PREDICTED: porp ( 344) 2242 517.0 2.4e-146
NP_001019553 (OMIM: 176000,609806) porphobilinogen ( 344) 2242 517.0 2.4e-146
XP_005271590 (OMIM: 176000,609806) PREDICTED: porp ( 343) 2169 500.5 2.3e-141
XP_011541098 (OMIM: 176000,609806) PREDICTED: porp ( 306) 2013 465.1 9.2e-131
NP_001245137 (OMIM: 176000,609806) porphobilinogen ( 321) 1400 326.2 6.3e-89
NP_001245138 (OMIM: 176000,609806) porphobilinogen ( 304) 1293 301.9 1.2e-81
>>NP_000181 (OMIM: 176000,609806) porphobilinogen deamin (361 aa)
initn: 2349 init1: 2349 opt: 2349 Z-score: 2879.1 bits: 541.3 E(85289): 1.2e-153
Smith-Waterman score: 2349; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
310 320 330 340 350 360
pF1KE4 H
:
NP_000 H
>>XP_016873118 (OMIM: 176000,609806) PREDICTED: porphobi (344 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2748.4 bits: 517.0 E(85289): 2.4e-146
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 344 aa overlap (18-361:1-344)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
:::::::::::::::::::::::::::::::::::::::::::
XP_016 MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
290 300 310 320 330 340
pF1KE4 H
:
XP_016 H
>>XP_005271588 (OMIM: 176000,609806) PREDICTED: porphobi (344 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2748.4 bits: 517.0 E(85289): 2.4e-146
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 344 aa overlap (18-361:1-344)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
:::::::::::::::::::::::::::::::::::::::::::
XP_005 MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
290 300 310 320 330 340
pF1KE4 H
:
XP_005 H
>>XP_005271589 (OMIM: 176000,609806) PREDICTED: porphobi (344 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2748.4 bits: 517.0 E(85289): 2.4e-146
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 344 aa overlap (18-361:1-344)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
:::::::::::::::::::::::::::::::::::::::::::
XP_005 MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
290 300 310 320 330 340
pF1KE4 H
:
XP_005 H
>>NP_001019553 (OMIM: 176000,609806) porphobilinogen dea (344 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2748.4 bits: 517.0 E(85289): 2.4e-146
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 344 aa overlap (18-361:1-344)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
:::::::::::::::::::::::::::::::::::::::::::
NP_001 MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
290 300 310 320 330 340
pF1KE4 H
:
NP_001 H
>>XP_005271590 (OMIM: 176000,609806) PREDICTED: porphobi (343 aa)
initn: 2169 init1: 2169 opt: 2169 Z-score: 2659.0 bits: 500.5 E(85289): 2.3e-141
Smith-Waterman score: 2189; 95.0% identity (95.0% similar) in 361 aa overlap (1-361:1-343)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
::::::::::: :::::::::::::::::::::::::::::::
XP_005 MSGNGNAAATA------------------LARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
290 300 310 320 330 340
pF1KE4 H
:
XP_005 H
>>XP_011541098 (OMIM: 176000,609806) PREDICTED: porphobi (306 aa)
initn: 2013 init1: 2013 opt: 2013 Z-score: 2468.6 bits: 465.1 E(85289): 9.2e-131
Smith-Waterman score: 2013; 100.0% identity (100.0% similar) in 306 aa overlap (56-361:1-306)
30 40 50 60 70 80
pF1KE4 RKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHAL
::::::::::::::::::::::::::::::
XP_011 MSTTGDKILDTALSKIGEKSLFTKELEHAL
10 20 30
90 100 110 120 130 140
pF1KE4 EKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGT
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE4 SSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQI
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE4 LHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPV
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE4 AVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITARNIPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITARNIPR
220 230 240 250 260 270
330 340 350 360
pF1KE4 GPQLAAQNLGISLANLLLSKGAKNILDVARQLNDAH
::::::::::::::::::::::::::::::::::::
XP_011 GPQLAAQNLGISLANLLLSKGAKNILDVARQLNDAH
280 290 300
>>NP_001245137 (OMIM: 176000,609806) porphobilinogen dea (321 aa)
initn: 2074 init1: 1397 opt: 1400 Z-score: 1717.5 bits: 326.2 E(85289): 6.3e-89
Smith-Waterman score: 1998; 88.9% identity (88.9% similar) in 361 aa overlap (1-361:1-321)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
:::::::::::::::::::::::::::::::::::::
NP_001 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQ-----------------------
190 200 210
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
:::::::::::::::::::::::::::::::::::::::::::
NP_001 -----------------EGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
220 230 240 250 260
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
270 280 290 300 310 320
pF1KE4 H
:
NP_001 H
>>NP_001245138 (OMIM: 176000,609806) porphobilinogen dea (304 aa)
initn: 1967 init1: 1290 opt: 1293 Z-score: 1586.8 bits: 301.9 E(85289): 1.2e-81
Smith-Waterman score: 1891; 88.4% identity (88.4% similar) in 344 aa overlap (18-361:1-304)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
:::::::::::::::::::::::::::::::::::::::::::
NP_001 MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
:::::::::::::::::::::::::::::::::::::
NP_001 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQ-----------------------
170 180 190 200
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
:::::::::::::::::::::::::::::::::::::::::::
NP_001 -----------------EGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
210 220 230 240
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
250 260 270 280 290 300
pF1KE4 H
:
NP_001 H
361 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:20:17 2016 done: Thu Nov 3 07:20:18 2016
Total Scan time: 8.280 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]