Result of FASTA (ccds) for
pFN21AE4345
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4345, 361 aa
1>>>pF1KE4345 361 - 361 aa - 361 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3849+/-0.000896; mu= 16.2840+/- 0.054
mean_var=66.3880+/-13.124, 0's: 0 Z-trim(105.8): 15 B-trim: 0 in 0/51
Lambda= 0.157409
statistics sampled from 8606 (8612) to 8606 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.265), width: 16
Scan time: 2.720
The best scores are: opt bits E(32554)
CCDS8409.1 HMBS gene_id:3145|Hs108|chr11 ( 361) 2349 542.3 2.4e-154
CCDS41726.1 HMBS gene_id:3145|Hs108|chr11 ( 344) 2242 518.0 4.8e-147
CCDS58186.1 HMBS gene_id:3145|Hs108|chr11 ( 321) 1400 326.7 1.6e-89
CCDS58187.1 HMBS gene_id:3145|Hs108|chr11 ( 304) 1293 302.4 3.2e-82
>>CCDS8409.1 HMBS gene_id:3145|Hs108|chr11 (361 aa)
initn: 2349 init1: 2349 opt: 2349 Z-score: 2884.4 bits: 542.3 E(32554): 2.4e-154
Smith-Waterman score: 2349; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
310 320 330 340 350 360
pF1KE4 H
:
CCDS84 H
>>CCDS41726.1 HMBS gene_id:3145|Hs108|chr11 (344 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2753.4 bits: 518.0 E(32554): 4.8e-147
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 344 aa overlap (18-361:1-344)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
:::::::::::::::::::::::::::::::::::::::::::
CCDS41 MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
290 300 310 320 330 340
pF1KE4 H
:
CCDS41 H
>>CCDS58186.1 HMBS gene_id:3145|Hs108|chr11 (321 aa)
initn: 2074 init1: 1397 opt: 1400 Z-score: 1720.5 bits: 326.7 E(32554): 1.6e-89
Smith-Waterman score: 1998; 88.9% identity (88.9% similar) in 361 aa overlap (1-361:1-321)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
:::::::::::::::::::::::::::::::::::::
CCDS58 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQ-----------------------
190 200 210
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
:::::::::::::::::::::::::::::::::::::::::::
CCDS58 -----------------EGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
220 230 240 250 260
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
270 280 290 300 310 320
pF1KE4 H
:
CCDS58 H
>>CCDS58187.1 HMBS gene_id:3145|Hs108|chr11 (304 aa)
initn: 1967 init1: 1290 opt: 1293 Z-score: 1589.5 bits: 302.4 E(32554): 3.2e-82
Smith-Waterman score: 1891; 88.4% identity (88.4% similar) in 344 aa overlap (18-361:1-304)
10 20 30 40 50 60
pF1KE4 MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
:::::::::::::::::::::::::::::::::::::::::::
CCDS58 MRVIRVGTRKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTG
10 20 30 40
70 80 90 100 110 120
pF1KE4 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD
:::::::::::::::::::::::::::::::::::::
CCDS58 QEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQ-----------------------
170 180 190 200
250 260 270 280 290 300
pF1KE4 PETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
:::::::::::::::::::::::::::::::::::::::::::
CCDS58 -----------------EGGCSVPVAVHTAMKDGQLYLTGGVWSLDGSDSIQETMQATIH
210 220 230 240
310 320 330 340 350 360
pF1KE4 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQLNDA
250 260 270 280 290 300
pF1KE4 H
:
CCDS58 H
361 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:20:17 2016 done: Thu Nov 3 07:20:17 2016
Total Scan time: 2.720 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]