FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6272, 182 aa 1>>>pF1KE6272 182 - 182 aa - 182 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1323+/-0.000354; mu= 13.9092+/- 0.022 mean_var=63.3826+/-12.318, 0's: 0 Z-trim(113.2): 36 B-trim: 231 in 2/56 Lambda= 0.161098 statistics sampled from 22389 (22422) to 22389 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.263), width: 16 Scan time: 3.530 The best scores are: opt bits E(85289) NP_000064 (OMIM: 186740,615607) T-cell surface gly ( 182) 1211 289.8 1.6e-78 XP_006719004 (OMIM: 186740,615607) PREDICTED: T-ce ( 182) 1211 289.8 1.6e-78 XP_005271781 (OMIM: 186740,615607) PREDICTED: T-ce ( 186) 968 233.3 1.7e-61 XP_016874032 (OMIM: 186790,615617) PREDICTED: T-ce ( 171) 428 107.8 9.4e-24 NP_000723 (OMIM: 186790,615617) T-cell surface gly ( 171) 428 107.8 9.4e-24 NP_001035741 (OMIM: 186790,615617) T-cell surface ( 127) 161 45.7 3.5e-05 >>NP_000064 (OMIM: 186740,615607) T-cell surface glycopr (182 aa) initn: 1211 init1: 1211 opt: 1211 Z-score: 1530.5 bits: 289.8 E(85289): 1.6e-78 Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR 130 140 150 160 170 180 pF1KE6 RN :: NP_000 RN >>XP_006719004 (OMIM: 186740,615607) PREDICTED: T-cell s (182 aa) initn: 1211 init1: 1211 opt: 1211 Z-score: 1530.5 bits: 289.8 E(85289): 1.6e-78 Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR 130 140 150 160 170 180 pF1KE6 RN :: XP_006 RN >>XP_005271781 (OMIM: 186740,615607) PREDICTED: T-cell s (186 aa) initn: 965 init1: 965 opt: 968 Z-score: 1225.1 bits: 233.3 E(85289): 1.7e-61 Smith-Waterman score: 968; 92.1% identity (95.7% similar) in 164 aa overlap (1-164:1-160) 10 20 30 40 50 60 pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR ::::::::::::::::::::::::::. :. :: :. .. :. XP_005 AEIVSIFVLAVGVYFIAGQDGVRQSRG--KRMLL--DERWDHLRPSAFLLPLCTQWKRLS 130 140 150 160 170 pF1KE6 RN XP_005 WCFLLVCIVG 180 >>XP_016874032 (OMIM: 186790,615617) PREDICTED: T-cell s (171 aa) initn: 410 init1: 323 opt: 428 Z-score: 547.4 bits: 107.8 E(85289): 9.4e-24 Smith-Waterman score: 433; 39.9% identity (69.9% similar) in 183 aa overlap (1-180:1-169) 10 20 30 40 50 60 pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK ::.. :. :.:: .: : .. .: . . . :: :...:.. .::: . XP_016 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEEL-ED-RVFVNCNT---SITWVEG-- 10 20 30 40 70 80 90 100 110 pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG .: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..: XP_016 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE6 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN .. ..... ..::.::. .::.. : : :.: :.:: :::.::::.::.: ::::: :: XP_016 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN 110 120 130 140 150 160 180 pF1KE6 QLRRN : XP_016 WARNK 170 >>NP_000723 (OMIM: 186790,615617) T-cell surface glycopr (171 aa) initn: 410 init1: 323 opt: 428 Z-score: 547.4 bits: 107.8 E(85289): 9.4e-24 Smith-Waterman score: 433; 39.9% identity (69.9% similar) in 183 aa overlap (1-180:1-169) 10 20 30 40 50 60 pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK ::.. :. :.:: .: : .. .: . . . :: :...:.. .::: . NP_000 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEEL-ED-RVFVNCNT---SITWVEG-- 10 20 30 40 70 80 90 100 110 pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG .: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..: NP_000 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE6 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN .. ..... ..::.::. .::.. : : :.: :.:: :::.::::.::.: ::::: :: NP_000 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN 110 120 130 140 150 160 180 pF1KE6 QLRRN : NP_000 WARNK 170 >>NP_001035741 (OMIM: 186790,615617) T-cell surface glyc (127 aa) initn: 261 init1: 138 opt: 161 Z-score: 213.9 bits: 45.7 E(85289): 3.5e-05 Smith-Waterman score: 194; 30.1% identity (50.3% similar) in 183 aa overlap (1-180:1-125) 10 20 30 40 50 60 pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK ::.. :. :.:: .: : .. .: . . . :: :...:.. .::: . NP_001 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEEL-ED-RVFVNCNT---SITWVEG-- 10 20 30 40 70 80 90 100 110 pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG .: : : . .::. ::::.:.:.:. ..: . .::.:: NP_001 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYR--------------- 50 60 70 80 90 120 130 140 150 160 170 pF1KE6 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN ..: :.:: :::.::::.::.: ::::: :: NP_001 -----------------------------TADTQALLRNDQVYQPLRDRDDAQYSHLGGN 100 110 120 180 pF1KE6 QLRRN : NP_001 WARNK 182 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:40:27 2016 done: Tue Nov 8 11:40:27 2016 Total Scan time: 3.530 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]