FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6272, 182 aa 1>>>pF1KE6272 182 - 182 aa - 182 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8586+/-0.000788; mu= 15.5148+/- 0.047 mean_var=61.8039+/-12.151, 0's: 0 Z-trim(106.5): 24 B-trim: 7 in 1/51 Lambda= 0.163142 statistics sampled from 8996 (9009) to 8996 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.277), width: 16 Scan time: 1.300 The best scores are: opt bits E(32554) CCDS8395.1 CD3G gene_id:917|Hs108|chr11 ( 182) 1211 293.1 6.2e-80 CCDS8394.1 CD3D gene_id:915|Hs108|chr11 ( 171) 428 108.8 1.8e-24 >>CCDS8395.1 CD3G gene_id:917|Hs108|chr11 (182 aa) initn: 1211 init1: 1211 opt: 1211 Z-score: 1548.5 bits: 293.1 E(32554): 6.2e-80 Smith-Waterman score: 1211; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 AEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGNQLR 130 140 150 160 170 180 pF1KE6 RN :: CCDS83 RN >>CCDS8394.1 CD3D gene_id:915|Hs108|chr11 (171 aa) initn: 410 init1: 323 opt: 428 Z-score: 552.9 bits: 108.8 E(32554): 1.8e-24 Smith-Waterman score: 433; 39.9% identity (69.9% similar) in 183 aa overlap (1-180:1-169) 10 20 30 40 50 60 pF1KE6 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK ::.. :. :.:: .: : .. .: . . . :: :...:.. .::: . CCDS83 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEEL-ED-RVFVNCNT---SITWVEG-- 10 20 30 40 70 80 90 100 110 pF1KE6 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG .: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..: CCDS83 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE6 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN .. ..... ..::.::. .::.. : : :.: :.:: :::.::::.::.: ::::: :: CCDS83 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN 110 120 130 140 150 160 180 pF1KE6 QLRRN : CCDS83 WARNK 170 182 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:40:26 2016 done: Tue Nov 8 11:40:27 2016 Total Scan time: 1.300 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]