FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6189, 171 aa 1>>>pF1KE6189 171 - 171 aa - 171 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8481+/-0.000351; mu= 14.6659+/- 0.022 mean_var=57.5304+/-11.518, 0's: 0 Z-trim(112.7): 29 B-trim: 0 in 0/53 Lambda= 0.169093 statistics sampled from 21676 (21690) to 21676 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.254), width: 16 Scan time: 5.330 The best scores are: opt bits E(85289) XP_016874032 (OMIM: 186790,615617) PREDICTED: T-ce ( 171) 1133 284.4 6.2e-77 NP_000723 (OMIM: 186790,615617) T-cell surface gly ( 171) 1133 284.4 6.2e-77 NP_001035741 (OMIM: 186790,615617) T-cell surface ( 127) 594 152.8 1.8e-37 NP_000064 (OMIM: 186740,615607) T-cell surface gly ( 182) 428 112.4 3.8e-25 XP_006719004 (OMIM: 186740,615607) PREDICTED: T-ce ( 182) 428 112.4 3.8e-25 XP_005271781 (OMIM: 186740,615607) PREDICTED: T-ce ( 186) 273 74.6 9.4e-14 NP_937758 (OMIM: 221770,604142) TYRO protein tyros ( 112) 132 40.1 0.0014 NP_001166986 (OMIM: 221770,604142) TYRO protein ty ( 101) 130 39.6 0.0018 NP_003323 (OMIM: 221770,604142) TYRO protein tyros ( 113) 130 39.6 0.002 NP_001166985 (OMIM: 221770,604142) TYRO protein ty ( 102) 128 39.1 0.0026 >>XP_016874032 (OMIM: 186790,615617) PREDICTED: T-cell s (171 aa) initn: 1133 init1: 1133 opt: 1133 Z-score: 1502.2 bits: 284.4 E(85289): 6.2e-77 Smith-Waterman score: 1133; 100.0% identity (100.0% similar) in 171 aa overlap (1-171:1-171) 10 20 30 40 50 60 pF1KE6 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 130 140 150 160 170 >>NP_000723 (OMIM: 186790,615617) T-cell surface glycopr (171 aa) initn: 1133 init1: 1133 opt: 1133 Z-score: 1502.2 bits: 284.4 E(85289): 6.2e-77 Smith-Waterman score: 1133; 100.0% identity (100.0% similar) in 171 aa overlap (1-171:1-171) 10 20 30 40 50 60 pF1KE6 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 130 140 150 160 170 >>NP_001035741 (OMIM: 186790,615617) T-cell surface glyc (127 aa) initn: 825 init1: 594 opt: 594 Z-score: 793.5 bits: 152.8 E(85289): 1.8e-37 Smith-Waterman score: 741; 73.7% identity (74.3% similar) in 171 aa overlap (1-171:1-127) 10 20 30 40 50 60 pF1KE6 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL ::::::::::::::::::::::::::::::: NP_001 GKRILDPRGIYRCNGTDIYKDKESTVQVHYR----------------------------- 70 80 90 130 140 150 160 170 pF1KE6 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK .::::::::::::::::::::::::::::::::::: NP_001 ---------------TADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 100 110 120 >>NP_000064 (OMIM: 186740,615607) T-cell surface glycopr (182 aa) initn: 410 init1: 323 opt: 428 Z-score: 572.4 bits: 112.4 E(85289): 3.8e-25 Smith-Waterman score: 433; 39.3% identity (70.5% similar) in 183 aa overlap (1-169:1-180) 10 20 30 40 pF1KE6 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEELED--RVFVNCNT---SITWV-EGT ::.. :. :.:: .: : .. .: . . . .. :...:.. .::: .: NP_000 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 -VGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG .: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..: NP_000 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN .. ..... ..::.::. .::.. : : :.: :.:: :::.::::.::.: ::::: :: NP_000 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN 120 130 140 150 160 170 170 pF1KE6 WARNK : NP_000 QLRRN 180 >>XP_006719004 (OMIM: 186740,615607) PREDICTED: T-cell s (182 aa) initn: 410 init1: 323 opt: 428 Z-score: 572.4 bits: 112.4 E(85289): 3.8e-25 Smith-Waterman score: 433; 39.3% identity (70.5% similar) in 183 aa overlap (1-169:1-180) 10 20 30 40 pF1KE6 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEELED--RVFVNCNT---SITWV-EGT ::.. :. :.:: .: : .. .: . . . .. :...:.. .::: .: XP_006 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 -VGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG .: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..: XP_006 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN .. ..... ..::.::. .::.. : : :.: :.:: :::.::::.::.: ::::: :: XP_006 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN 120 130 140 150 160 170 170 pF1KE6 WARNK : XP_006 QLRRN 180 >>XP_005271781 (OMIM: 186740,615607) PREDICTED: T-cell s (186 aa) initn: 251 init1: 164 opt: 273 Z-score: 367.9 bits: 74.6 E(85289): 9.4e-14 Smith-Waterman score: 278; 32.4% identity (67.6% similar) in 148 aa overlap (1-134:1-145) 10 20 30 40 pF1KE6 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEELED--RVFVNCNT---SITWVEG-- ::.. :. :.:: .: : .. .: . . . .. :...:.. .::: . XP_005 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 TVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG .: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..: XP_005 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN .. ..... ..::.::. .::.. : : XP_005 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRGKRMLLDERWDHLRPSAFLLPLCTQWKRLSW 120 130 140 150 160 170 >>NP_937758 (OMIM: 221770,604142) TYRO protein tyrosine (112 aa) initn: 110 init1: 94 opt: 132 Z-score: 185.2 bits: 40.1 E(85289): 0.0014 Smith-Waterman score: 132; 33.3% identity (67.9% similar) in 81 aa overlap (86-163:25-104) 60 70 80 90 100 110 pF1KE6 TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIAT ::.. . :: ..:...:::.. :.. : NP_937 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLT 10 20 30 40 50 120 130 140 150 160 170 pF1KE6 LLLALGVFCFAGHETGRLSGAADT---QALLRNDQVYQPLRDRDDAQYSHLGGNWARNK .:.::.:. : :. . : :::.. : . .... :: :. . . :: : NP_937 VLIALAVY-FLGRLVPRGRGAAEATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 60 70 80 90 100 110 >>NP_001166986 (OMIM: 221770,604142) TYRO protein tyrosi (101 aa) initn: 119 init1: 91 opt: 130 Z-score: 183.2 bits: 39.6 E(85289): 0.0018 Smith-Waterman score: 130; 35.1% identity (68.9% similar) in 74 aa overlap (93-163:22-93) 70 80 90 100 110 120 pF1KE6 RILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGV : :: ..:...:::.. :.. :.:.::.: NP_001 MGGLEPCSRLLLLPLLLAVSDC-SCSTVSPGVLAGIVMGDLVLTVLIALAV 10 20 30 40 50 130 140 150 160 170 pF1KE6 FCFAGHETGRLSGAADT---QALLRNDQVYQPLRDRDDAQYSHLGGNWARNK . : :. . : :::.. : . .... :: :. . . :: : NP_001 Y-FLGRLVPRGRGAAEATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 60 70 80 90 100 >>NP_003323 (OMIM: 221770,604142) TYRO protein tyrosine (113 aa) initn: 110 init1: 94 opt: 130 Z-score: 182.5 bits: 39.6 E(85289): 0.002 Smith-Waterman score: 130; 32.9% identity (67.1% similar) in 82 aa overlap (86-163:25-105) 60 70 80 90 100 110 pF1KE6 TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIAT ::.. . :: ..:...:::.. :.. : NP_003 MGGLEPCSRLLLLPLLLAVSGLRPVQAQAQSDCSCSTVSPGVLAGIVMGDLVLT 10 20 30 40 50 120 130 140 150 160 170 pF1KE6 LLLALGVFCFAGHETGRLSGAADT----QALLRNDQVYQPLRDRDDAQYSHLGGNWARNK .:.::.:. : :. . : :::.. : . .... :: :. . . :: : NP_003 VLIALAVY-FLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 60 70 80 90 100 110 >>NP_001166985 (OMIM: 221770,604142) TYRO protein tyrosi (102 aa) initn: 119 init1: 91 opt: 128 Z-score: 180.5 bits: 39.1 E(85289): 0.0026 Smith-Waterman score: 128; 34.7% identity (68.0% similar) in 75 aa overlap (93-163:22-94) 70 80 90 100 110 120 pF1KE6 RILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGV : :: ..:...:::.. :.. :.:.::.: NP_001 MGGLEPCSRLLLLPLLLAVSDC-SCSTVSPGVLAGIVMGDLVLTVLIALAV 10 20 30 40 50 130 140 150 160 170 pF1KE6 FCFAGHETGRLSGAADT----QALLRNDQVYQPLRDRDDAQYSHLGGNWARNK . : :. . : :::.. : . .... :: :. . . :: : NP_001 Y-FLGRLVPRGRGAAEAATRKQRITETESPYQELQGQRSDVYSDLNTQRPYYK 60 70 80 90 100 171 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:11:58 2016 done: Tue Nov 8 10:11:58 2016 Total Scan time: 5.330 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]