FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6189, 171 aa 1>>>pF1KE6189 171 - 171 aa - 171 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2642+/-0.000811; mu= 12.0530+/- 0.049 mean_var=55.5128+/-10.934, 0's: 0 Z-trim(106.0): 26 B-trim: 0 in 0/52 Lambda= 0.172138 statistics sampled from 8726 (8739) to 8726 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.268), width: 16 Scan time: 1.730 The best scores are: opt bits E(32554) CCDS8394.1 CD3D gene_id:915|Hs108|chr11 ( 171) 1133 289.2 8.2e-79 CCDS41724.1 CD3D gene_id:915|Hs108|chr11 ( 127) 594 155.3 1.2e-38 CCDS8395.1 CD3G gene_id:917|Hs108|chr11 ( 182) 428 114.1 4.4e-26 >>CCDS8394.1 CD3D gene_id:915|Hs108|chr11 (171 aa) initn: 1133 init1: 1133 opt: 1133 Z-score: 1528.4 bits: 289.2 E(32554): 8.2e-79 Smith-Waterman score: 1133; 100.0% identity (100.0% similar) in 171 aa overlap (1-171:1-171) 10 20 30 40 50 60 pF1KE6 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS83 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 130 140 150 160 170 >>CCDS41724.1 CD3D gene_id:915|Hs108|chr11 (127 aa) initn: 825 init1: 594 opt: 594 Z-score: 807.1 bits: 155.3 E(32554): 1.2e-38 Smith-Waterman score: 741; 73.7% identity (74.3% similar) in 171 aa overlap (1-171:1-127) 10 20 30 40 50 60 pF1KE6 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 GKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLAL ::::::::::::::::::::::::::::::: CCDS41 GKRILDPRGIYRCNGTDIYKDKESTVQVHYR----------------------------- 70 80 90 130 140 150 160 170 pF1KE6 GVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK .::::::::::::::::::::::::::::::::::: CCDS41 ---------------TADTQALLRNDQVYQPLRDRDDAQYSHLGGNWARNK 100 110 120 >>CCDS8395.1 CD3G gene_id:917|Hs108|chr11 (182 aa) initn: 410 init1: 323 opt: 428 Z-score: 581.8 bits: 114.1 E(32554): 4.4e-26 Smith-Waterman score: 433; 39.3% identity (70.5% similar) in 183 aa overlap (1-169:1-180) 10 20 30 40 pF1KE6 MEHSTFLSGLVLATLLSQ---VSPFK----IPIEELED--RVFVNCNT---SITWV-EGT ::.. :. :.:: .: : .. .: . . . .. :...:.. .::: .: CCDS83 MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 -VGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQVHYRMCQSCVELDPATVAG .: : : . .::. ::::.:.:.:. ..: . .::.:::::.:.::. ::..: CCDS83 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGS---QNKSKPLQVYYRMCQNCIELNAATISG 70 80 90 100 110 110 120 130 140 150 160 pF1KE6 IIVTDVIATLLLALGVFCFAGHETGRLSGAADTQALLRNDQVYQPLRDRDDAQYSHLGGN .. ..... ..::.::. .::.. : : :.: :.:: :::.::::.::.: ::::: :: CCDS83 FLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLYQPLKDREDDQYSHLQGN 120 130 140 150 160 170 170 pF1KE6 WARNK : CCDS83 QLRRN 180 171 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:11:57 2016 done: Tue Nov 8 10:11:57 2016 Total Scan time: 1.730 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]