FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2423, 278 aa
  1>>>pF1KE2423 278 - 278 aa - 278 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4564+/-0.000339; mu= 10.8120+/- 0.021
 mean_var=109.1173+/-21.350, 0's: 0 Z-trim(117.0): 6  B-trim: 323 in 1/53
 Lambda= 0.122780
 statistics sampled from 28705 (28710) to 28705 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.337), width:  16
 Scan time:  5.410

The best scores are:                                      opt bits E(85289)
NP_077021 (OMIM: 612823) TATA box-binding protein- ( 278) 1828 334.1 1.8e-91


>>NP_077021 (OMIM: 612823) TATA box-binding protein-asso  (278 aa)
 initn: 1828 init1: 1828 opt: 1828  Z-score: 1763.3  bits: 334.1 E(85289): 1.8e-91
Smith-Waterman score: 1828; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KE2 MDKSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MDKSGIDSLDHVTSDAVELANRSDNSSDSSLFKTQCIPYSPKGEKRNPIRKFVRTPESVH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 ASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 ASDSSSDSSFEPIPLTIKAIFERFKNRKKRYKKKKKRRYQPTGRPRGRPEGRRNPIYSLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKESLKQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 DKKKQFRSRGSGFPFLESENEKNAPWRKILTFEQAVARGFFNYIEKLKYEHHLKESLKQM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 NVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 NVGEDLENEDFDSRRYKFLDDDGSISPIEESTAEDEDATHLEDNECDIKLAGDSFIVSSE
              190       200       210       220       230       240

              250       260       270        
pF1KE2 FPVRLSVYLEEEDITEEAALSKKRATKAKNTGQRGLKM
       ::::::::::::::::::::::::::::::::::::::
NP_077 FPVRLSVYLEEEDITEEAALSKKRATKAKNTGQRGLKM
              250       260       270        




278 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:44:11 2016 done: Mon Nov  7 19:44:11 2016
 Total Scan time:  5.410 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]