FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1729, 237 aa 1>>>pF1KE1729 237 - 237 aa - 237 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6776+/-0.000282; mu= 13.6698+/- 0.018 mean_var=90.3000+/-17.904, 0's: 0 Z-trim(120.6): 6 B-trim: 634 in 1/51 Lambda= 0.134968 statistics sampled from 36137 (36143) to 36137 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.424), width: 16 Scan time: 5.210 The best scores are: opt bits E(85289) NP_001284 (OMIM: 602158) methylosome subunit pICln ( 237) 1591 318.9 4.7e-87 NP_001298128 (OMIM: 602158) methylosome subunit pI ( 237) 1591 318.9 4.7e-87 NP_001298130 (OMIM: 602158) methylosome subunit pI ( 179) 1074 218.2 7.6e-57 NP_001298129 (OMIM: 602158) methylosome subunit pI ( 203) 783 161.6 9.6e-40 NP_001298131 (OMIM: 602158) methylosome subunit pI ( 167) 607 127.2 1.7e-29 >>NP_001284 (OMIM: 602158) methylosome subunit pICln iso (237 aa) initn: 1591 init1: 1591 opt: 1591 Z-score: 1683.9 bits: 318.9 E(85289): 4.7e-87 Smith-Waterman score: 1591; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 190 200 210 220 230 >>NP_001298128 (OMIM: 602158) methylosome subunit pICln (237 aa) initn: 1591 init1: 1591 opt: 1591 Z-score: 1683.9 bits: 318.9 E(85289): 4.7e-87 Smith-Waterman score: 1591; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 190 200 210 220 230 >>NP_001298130 (OMIM: 602158) methylosome subunit pICln (179 aa) initn: 1243 init1: 1071 opt: 1074 Z-score: 1141.5 bits: 218.2 E(85289): 7.6e-57 Smith-Waterman score: 1093; 75.5% identity (75.5% similar) in 237 aa overlap (1-237:1-179) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE ::::::::::::::::::::::::::::::::::::: NP_001 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAH----------------------- 130 140 150 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH :::::::::::::::::::::: NP_001 -----------------------------------DGMEVDTTPTVAGQFEDADVDH 160 170 >>NP_001298129 (OMIM: 602158) methylosome subunit pICln (203 aa) initn: 804 init1: 782 opt: 783 Z-score: 834.5 bits: 161.6 E(85289): 9.6e-40 Smith-Waterman score: 1287; 85.2% identity (85.7% similar) in 237 aa overlap (1-237:1-203) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS ::::::::::::::::::::::::::: NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFE--------------------------------- 70 80 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 -VEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE 90 100 110 120 130 140 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 150 160 170 180 190 200 >>NP_001298131 (OMIM: 602158) methylosome subunit pICln (167 aa) initn: 648 init1: 595 opt: 607 Z-score: 650.5 bits: 127.2 E(85289): 1.7e-29 Smith-Waterman score: 957; 70.5% identity (70.5% similar) in 237 aa overlap (1-237:1-167) 10 20 30 40 50 60 pF1KE1 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 ISLHALSRDRSDCLGEHLYVMVNAKFEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKS :::::::::::::::::::::::::::: NP_001 ISLHALSRDRSDCLGEHLYVMVNAKFEE-------------------------------- 70 80 130 140 150 160 170 180 pF1KE1 ALEAMFTAMCECQALHPDPEDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAE :::::::::::::::::::::: NP_001 --------------------------------------QGQGDIPTFYTYEEGLSHLTAE 90 100 110 190 200 210 220 230 pF1KE1 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GQATLERLEGMLSQSVSSQYNMAGVRTEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 120 130 140 150 160 237 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:03:58 2016 done: Sun Nov 6 15:03:58 2016 Total Scan time: 5.210 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]