FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1135, 353 aa 1>>>pF1KE1135 353 - 353 aa - 353 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6778+/-0.000867; mu= 9.6043+/- 0.051 mean_var=116.2773+/-23.945, 0's: 0 Z-trim(110.1): 145 B-trim: 16 in 1/50 Lambda= 0.118940 statistics sampled from 11156 (11335) to 11156 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.348), width: 16 Scan time: 3.050 The best scores are: opt bits E(32554) CCDS8246.1 TSKU gene_id:25987|Hs108|chr11 ( 353) 2343 413.0 2e-115 CCDS1448.1 LRRN2 gene_id:10446|Hs108|chr1 ( 713) 337 68.9 1.4e-11 >>CCDS8246.1 TSKU gene_id:25987|Hs108|chr11 (353 aa) initn: 2343 init1: 2343 opt: 2343 Z-score: 2185.8 bits: 413.0 E(32554): 2e-115 Smith-Waterman score: 2343; 99.7% identity (100.0% similar) in 353 aa overlap (1-353:1-353) 10 20 30 40 50 60 pF1KE1 MPWPLLLLLAVSGAQTTRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIMPVPIPLDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MPWPLLLLLAVSGAQTTRPCFPGCQCEVETFGLFDSFSLTRVDCSGLGPHIMPVPIPLDT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 AHLDLSSNRLEMVNESVLAGPGYTTLAGLDLSHNLLTSISPTAFSRLRYLESLDLSHNGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 AHLDLSSNRLEMVNESVLAGPGYTTLAGLDLSHNLLTSISPTAFSRLRYLESLDLSHNGL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TALPAESFTSSPLSDVNLSHNQLREVSVSAFTTHSQGRALHVDLSHNLIHRLVPHPTRAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 TALPAESFTSSPLSDVNLSHNQLREVSVSAFTTHSQGRALHVDLSHNLIHRLVPHPTRAG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LPAPTIQSLNLAWNRLHAVPNLRDLPLRYLSLDGNPLAVIGPGAFAGLGGLTHLSLASLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 LPAPTIQSLNLAWNRLHAVPNLRDLPLRYLSLDGNPLAVIGPGAFAGLGGLTHLSLASLQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 RLPELAPSGFRELPGLQVLDLSGNPKLNWAGAEVFSGLSSLQELDLSGTNLVPLPEALLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 RLPELAPSGFRELPGLQVLDLSGNPKLNWAGAEVFSGLSSLQELDLSGTNLVPLPEALLL 250 260 270 280 290 300 310 320 330 340 350 pF1KE1 HLPALQSVSVGQDVRCRRLVREGTYPRRPGSSPKVALHCVDTRESAARGPTIL :::::::::::::::::::::::::::::::::::::::::::.::::::::: CCDS82 HLPALQSVSVGQDVRCRRLVREGTYPRRPGSSPKVALHCVDTRDSAARGPTIL 310 320 330 340 350 >>CCDS1448.1 LRRN2 gene_id:10446|Hs108|chr1 (713 aa) initn: 342 init1: 175 opt: 337 Z-score: 321.2 bits: 68.9 E(32554): 1.4e-11 Smith-Waterman score: 377; 33.2% identity (59.3% similar) in 307 aa overlap (19-315:28-322) 10 20 30 40 pF1KE1 MPWPLLLLLAVSGAQTTRPCFPGCQCEVET-FGLFDSFS-LTRVDCSGLGP :: : : :... . .:. : :::. : CCDS14 MRLLVAPLLLAWVAGATAAVPVVPWHVPCPPQCACQIRPWYTPRSSYREATTVDCNDLFL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 HIMPVPIPLDTAHLDLSSNRLEMVNESVLAGPGY-TTLAGLDLSHNLLTSISPTAFSRLR .: .: : : :.:: . :..: : :: ..:. ::::.: ... : : CCDS14 TAVPPALPAGTQTLLLQSNSIVRVDQSEL---GYLANLTELDLSQNSFSDARDCDFHALP 70 80 90 100 110 110 120 130 140 150 160 pF1KE1 YLESLDLSHNGLTALPAESFTS-SPLSDVNLSHNQLREVSVSAFTTHSQGRALHVDLSHN : :: : .: :: : .::.. . :... :.:::: ... ::. :. :: :. : CCDS14 QLLSLHLEENQLTRLEDHSFAGLASLQELYLNHNQLYRIAPRAFSGLSNLLRLH--LNSN 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE1 LIHRLVPHPTRAGLPAPTIQSLNLAWNRLHAV--PNLRDLP-LRYLSLDGNPLAVIGPGA :.. . .: :... : .. :.. :. :.: : :: : : : : :. : CCDS14 LLRAI---DSRWFEMLPNLEILMIGGNKVDAILDMNFRPLANLRSLVLAGMNLREISDYA 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE1 FAGLGGLTHLSL--ASLQRLPELAPSGFRELPGLQVLDLSGNPKLNWAGAEVFSGLSSLQ . :: .: ::. .: :.:. : ....:::. :::. :: :. .: :... :. CCDS14 LEGLQSLESLSFYDNQLARVPRRA---LEQVPGLKFLDLNKNP-LQRVGPGDFANMLHLK 240 250 260 270 280 290 300 310 320 330 340 pF1KE1 ELDLSGTN-LVPLPEALLLHLPALQSVSVGQDVRCRRLVREGTYPRRPGSSPKVALHCVD :: :.. . :: . . :..:: : .... .. : CCDS14 ELGLNNMEELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHLPQMETLMLNNNALS 290 300 310 320 330 340 350 pF1KE1 TRESAARGPTIL CCDS14 ALHQQTVESLPNLQEVGLHGNPIRCDCVIRWANATGTRVRFIEPQSTLCAEPPDLQRLPV 350 360 370 380 390 400 353 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 15:04:26 2016 done: Sun Nov 6 15:04:26 2016 Total Scan time: 3.050 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]