Result of FASTA (ccds) for
pFN21AB5770
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5770, 761 aa
1>>>pF1KB5770 761 - 761 aa - 761 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4314+/-0.00115; mu= 15.0714+/- 0.069
mean_var=98.3304+/-19.169, 0's: 0 Z-trim(103.3): 37 B-trim: 0 in 0/50
Lambda= 0.129339
statistics sampled from 7326 (7348) to 7326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.226), width: 16
Scan time: 3.580
The best scores are: opt bits E(32554)
CCDS8243.1 THAP12 gene_id:5612|Hs108|chr11 ( 761) 5046 952.9 0
CCDS41302.1 ZMYM1 gene_id:79830|Hs108|chr1 (1142) 522 108.9 4.8e-23
>>CCDS8243.1 THAP12 gene_id:5612|Hs108|chr11 (761 aa)
initn: 5046 init1: 5046 opt: 5046 Z-score: 5092.0 bits: 952.9 E(32554): 0
Smith-Waterman score: 5046; 100.0% identity (100.0% similar) in 761 aa overlap (1-761:1-761)
10 20 30 40 50 60
pF1KB5 MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MPNFCAAPNCTRKSTQSDLAFFRFPRDPARCQKWVENCRRADLEDKTPDQLNKHYRLCAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 HFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HFETSMICRTSPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEEKENKEYLKSLFEILILMGKQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEEKENKEYLKSLFEILILMGKQN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 IPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQMLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IPLDGHEADEIPEGLFTPDNFQALLECRINSGEEVLRKRFETTAVNTLFCSKTQQRQMLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 ICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHNLREEFIGFLPYE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 ADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIYTLCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ADAEILAVKFHTMITEKWGLNMEYCRGQAYIVSSGFSSKMKVVASRLLEKYPQAIYTLCS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 SCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNSKERGKELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SCALNMWLAKSVPVMGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNSKERGKELK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 EICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYIAGRAFVLCSAVSDFDFI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 VTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNEVMENIEVYHEFWFEEAT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 NLATKLDIQMKLPGKFRRAHQGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NLATKLDIQMKLPGKFRRAHQGNLESQLTSESYYKETLSVPTVEHIIQELKDIFSEQHLK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 ALKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALKCLSLVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSAELHCWRIKWKHRGKDIELPS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 TIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENGRKRLKAYLRNTLTDQRSSNL
670 680 690 700 710 720
730 740 750 760
pF1KB5 ALLNINFDIKHDLDLMVDTYIKLYTSKSELPTDNSETVENT
:::::::::::::::::::::::::::::::::::::::::
CCDS82 ALLNINFDIKHDLDLMVDTYIKLYTSKSELPTDNSETVENT
730 740 750 760
>>CCDS41302.1 ZMYM1 gene_id:79830|Hs108|chr1 (1142 aa)
initn: 266 init1: 109 opt: 522 Z-score: 527.2 bits: 108.9 E(32554): 4.8e-23
Smith-Waterman score: 528; 26.0% identity (57.6% similar) in 616 aa overlap (146-733:533-1122)
120 130 140 150 160 170
pF1KB5 QKKIDETSEQEQKHKETNNSNAQNPSEEEGEGQDEDILPLTLEEKE-NKEYLKSLFEILI
.: : : . .. : ::.::: ..: ..
CCDS41 WKKTLEKFRKHEKSEMHLKSLEFWREYQFCDGAVSDDLSIHSKQIEGNKKYLKLIIENIL
510 520 530 540 550 560
180 190 200 210 220 230
pF1KB5 LMGKQNIPLDGHE--ADEIPEGLFTPDNFQALLECRI-NSGEEVLRKRFETTAVNTLFCS
..::: .:: :.. .. . .: :: ::: : ..:::.. :. .. :. : .
CCDS41 FLGKQCLPLRGNDQSVSSVNKG-----NFLELLEMRAKDKGEETF--RLMNSQVD--FYN
570 580 590 600 610
240 250 260 270 280
pF1KB5 KTQ-QRQMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPVLVRFVDESHN--
.:: : ...:: .. . .. . :. :: :::: :.... : .:.: . ::. ..: .
CCDS41 STQIQSDIIEIIKTEMLQDIVNEINDSSAFSIICDETINSAMKEQLSICVRYPQKSSKAI
620 630 640 650 660 670
290 300 310 320 330 340
pF1KB5 -LREEFIGFLPYEADAEILAVKFHTMIT---EKWGLNMEYCRGQAYIVSSGFSSKMKVVA
..:.:.::. : :. ....: : .. :..:. .:::: ..... :.. .:
CCDS41 LIKERFLGFVDTE---EMTGTHLHRTIKTYLQQIGVDMDKIHGQAYDSTTNLKIKFNKIA
680 690 700 710 720 730
350 360 370 380 390 400
pF1KB5 SRLLEKYPQAIYTLCSSCALNMWLAKSVP-VMGVSVALGTIEEVCSFFHRSPQLLLELDN
... .. :.:.: : . :.. . . : . :: :. . . . : ..: .. :
CCDS41 AEFKKEEPRALYIHCYAHFLDLSIIRFCKEVKELRSALKTLSSLFNTICMSGEMLANFRN
740 750 760 770 780 790
410 420 430 440 450 460
pF1KB5 VISVLFQNSKERGKELKEICHSQWTGRHDAFEILVELLQALVLCLDGINSDTNIRWNNYI
. : ::. . :.: .: :: . .. ... : .. :. : : .. :. .
CCDS41 IYR-LSQNKTCK----KHISQSCWTVHDRTLLSVIDSLPEIIETLEVIASHSS---NTSF
800 810 820 830 840
470 480 490 500 510 520
pF1KB5 AGRAFVLCSAVSDFDFIVTIVVLKNVLSFTRAFGKNLQGQTSDVFFAAGSLTAVLHSLNE
: . : . :: :.:. . : ::: : ..:.::..: :.: .... :.:. :.
CCDS41 ADELSHLLTLVSKFEFVFCLKFLYRVLSVTGILSKELQNKTIDIFSLSSKIEAILECLSS
850 860 870 880 890 900
530 540 550 560 570
pF1KB5 VMENIEVYHE-FW--FEEATNLATKLDIQMKLPG--KFRRAHQ----GNLESQL---TSE
: .:: . .: :: . : .... :. : :. .. :: .... ..:
CCDS41 --ERNDVYFKTIWDGTEEICQKITCKGFKVEKPSLQKRRKIQKSVDLGNSDNMFFPTSTE
910 920 930 940 950 960
580 590 600 610 620 630
pF1KB5 SYYKETLSVPTVEHIIQELKDIFSEQHLKALKCLSLVPSVMGQLKFNTSEEHHADMYRSD
:: .. .. :.:.:: ::: .: .: . .. .:. .: ..:. :
CCDS41 EQYKINIYYQGLDTILQNLKLCFSEFDYCKIKQISELLFKWNEPLNETTAKHVQEFYKLD
970 980 990 1000 1010 1020
640 650 660 670 680
pF1KB5 LPNPDTLSAELHCWRIKWKHRGKDIELPST----IYEALHLPDIKFFPNVYALLKVLCIL
: : .... . :.. : : ..:: .: : . :: .
CCDS41 EDIIPELRFYRHYAKLNFVIDDSCINFVSLGCLFIQHGLH-SNI---PCLSKLLYIALSW
1030 1040 1050 1060 1070
690 700 710 720 730 740
pF1KB5 PVMKVENERYENGRKRLKAYLRNTLTDQRSSNLALLNINFDIKHDLDLMVDTYIKLYTSK
:. .. .: . :::.:: ::. ... .. ::. .. .. . :
CCDS41 PITSASTENSFSTLPRLKTYLCNTMGQEKLTGPALMAVEQELVNKLMEPERLNEIVEKFI
1080 1090 1100 1110 1120 1130
750 760
pF1KB5 SELPTDNSETVENT
CCDS41 SQMKEI
1140
761 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 15:05:13 2016 done: Sun Nov 6 15:05:14 2016
Total Scan time: 3.580 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]