FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5103, 103 aa 1>>>pF1KE5103 103 - 103 aa - 103 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8610+/-0.000258; mu= 11.6511+/- 0.016 mean_var=49.4293+/- 9.813, 0's: 0 Z-trim(119.6): 20 B-trim: 262 in 1/54 Lambda= 0.182424 statistics sampled from 33805 (33825) to 33805 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.397), width: 16 Scan time: 3.830 The best scores are: opt bits E(85289) XP_016872540 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48 XP_016872536 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48 XP_016872539 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48 XP_016872538 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48 XP_016872541 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48 XP_016872537 (OMIM: 604433,613119) PREDICTED: pota ( 103) 683 186.3 7.5e-48 NP_005463 (OMIM: 604433,613119) potassium voltage- ( 103) 683 186.3 7.5e-48 XP_011543015 (OMIM: 604433,613119) PREDICTED: pota ( 147) 683 186.4 1e-47 NP_036414 (OMIM: 300328) potassium voltage-gated c ( 142) 151 46.3 1.4e-05 >>XP_016872540 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa) initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48 Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 10 20 30 40 50 60 70 80 90 100 pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI ::::::::::::::::::::::::::::::::::::::::::: XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 70 80 90 100 >>XP_016872536 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa) initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48 Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 10 20 30 40 50 60 70 80 90 100 pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI ::::::::::::::::::::::::::::::::::::::::::: XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 70 80 90 100 >>XP_016872539 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa) initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48 Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 10 20 30 40 50 60 70 80 90 100 pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI ::::::::::::::::::::::::::::::::::::::::::: XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 70 80 90 100 >>XP_016872538 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa) initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48 Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 10 20 30 40 50 60 70 80 90 100 pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI ::::::::::::::::::::::::::::::::::::::::::: XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 70 80 90 100 >>XP_016872541 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa) initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48 Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 10 20 30 40 50 60 70 80 90 100 pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI ::::::::::::::::::::::::::::::::::::::::::: XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 70 80 90 100 >>XP_016872537 (OMIM: 604433,613119) PREDICTED: potassiu (103 aa) initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48 Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 10 20 30 40 50 60 70 80 90 100 pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI ::::::::::::::::::::::::::::::::::::::::::: XP_016 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 70 80 90 100 >>NP_005463 (OMIM: 604433,613119) potassium voltage-gate (103 aa) initn: 683 init1: 683 opt: 683 Z-score: 980.1 bits: 186.3 E(85289): 7.5e-48 Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 10 20 30 40 50 60 70 80 90 100 pF1KE5 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI ::::::::::::::::::::::::::::::::::::::::::: NP_005 ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 70 80 90 100 >>XP_011543015 (OMIM: 604433,613119) PREDICTED: potassiu (147 aa) initn: 683 init1: 683 opt: 683 Z-score: 977.6 bits: 186.4 E(85289): 1e-47 Smith-Waterman score: 683; 100.0% identity (100.0% similar) in 103 aa overlap (1-103:45-147) 10 20 30 pF1KE5 METTNGTETWYESLHAVLKALNATLHSNLL :::::::::::::::::::::::::::::: XP_011 RRVQRANGRPGALLRGRASTESSPTSIPVAMETTNGTETWYESLHAVLKALNATLHSNLL 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE5 CRPGPGLGPDNQTEERRASLPGRDDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CRPGPGLGPDNQTEERRASLPGRDDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSD 80 90 100 110 120 130 100 pF1KE5 PYHVYIKNRVSMI ::::::::::::: XP_011 PYHVYIKNRVSMI 140 >>NP_036414 (OMIM: 300328) potassium voltage-gated chann (142 aa) initn: 154 init1: 140 opt: 151 Z-score: 221.1 bits: 46.3 E(85289): 1.4e-05 Smith-Waterman score: 151; 42.9% identity (76.2% similar) in 63 aa overlap (32-91:34-94) 10 20 30 40 50 pF1KE5 ETTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLG--PDNQTEERRASLPGRDDNSYM ::. :.: :: . .. .: : :..:. NP_036 SESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKG--DDAYL 10 20 30 40 50 60 60 70 80 90 100 pF1KE5 YILFVMFLFAVTVGSLILGYTRSRK-VDKRSDPYHVYIKNRVSMI :::..:...: .:.:::.:::::: :. ...: NP_036 YILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQA 70 80 90 100 110 120 NP_036 EGRRQLASEGLPALAQGAERV 130 140 103 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:06:10 2016 done: Mon Nov 7 21:06:11 2016 Total Scan time: 3.830 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]