FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7576, 284 aa 1>>>pF1KB7576 284 - 284 aa - 284 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.6751+/-0.000334; mu= -0.2745+/- 0.021 mean_var=344.7736+/-68.420, 0's: 0 Z-trim(126.2): 196 B-trim: 114 in 1/60 Lambda= 0.069073 statistics sampled from 51274 (51520) to 51274 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.604), width: 16 Scan time: 8.330 The best scores are: opt bits E(85289) NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 1976 209.4 6.6e-54 NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 948 107.0 4.8e-23 NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 387 51.1 3.3e-06 NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299) 383 50.6 4.2e-06 NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 386 51.2 5.1e-06 NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 375 49.7 6.1e-06 NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 371 49.5 1e-05 XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 365 48.6 1.1e-05 NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 365 48.8 1.3e-05 NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 363 48.6 1.7e-05 NP_001257454 (OMIM: 600037,610125,613986) homeobox ( 297) 355 47.8 2.9e-05 NP_068374 (OMIM: 600037,610125,613986) homeobox pr ( 297) 355 47.8 2.9e-05 NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 348 46.9 3.4e-05 NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 348 47.1 4.3e-05 NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 350 47.4 4.5e-05 NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289) 347 47.0 4.9e-05 NP_758840 (OMIM: 600037,610125,613986) homeobox pr ( 289) 347 47.0 4.9e-05 NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289) 347 47.0 4.9e-05 NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 344 46.9 7.6e-05 XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 336 45.8 8.1e-05 NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 336 45.8 8.6e-05 NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 336 45.9 9.3e-05 NP_055377 (OMIM: 600036) homeobox protein OTX1 [Ho ( 354) 336 46.0 0.00012 NP_001186699 (OMIM: 600036) homeobox protein OTX1 ( 354) 336 46.0 0.00012 NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 335 46.0 0.00014 NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 335 46.0 0.00014 NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 335 46.1 0.00016 NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 335 46.1 0.00016 NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 335 46.1 0.00016 NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 335 46.1 0.00016 XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 321 44.3 0.00025 XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 324 44.9 0.00029 XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 324 44.9 0.00029 NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 324 44.9 0.00029 NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382) 324 44.9 0.00029 NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 324 44.9 0.0003 NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 321 44.5 0.00032 NP_001290437 (OMIM: 612019) intestine-specific hom ( 245) 316 43.9 0.00037 NP_006252 (OMIM: 262600,601538) homeobox protein p ( 226) 312 43.4 0.00046 NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 317 44.3 0.00056 NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 317 44.3 0.00057 NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 317 44.3 0.00057 NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 311 43.5 0.0006 XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 310 43.3 0.00062 NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361) 311 43.5 0.00068 NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 310 43.5 0.00073 XP_006713791 (OMIM: 602504) PREDICTED: short statu ( 190) 297 41.8 0.0012 XP_016862544 (OMIM: 602504) PREDICTED: short statu ( 190) 297 41.8 0.0012 XP_016862543 (OMIM: 602504) PREDICTED: short statu ( 204) 297 41.9 0.0012 XP_016862542 (OMIM: 602504) PREDICTED: short statu ( 204) 297 41.9 0.0012 >>NP_005160 (OMIM: 602078,602753) paired mesoderm homeob (284 aa) initn: 1976 init1: 1976 opt: 1976 Z-score: 1088.8 bits: 209.4 E(85289): 6.6e-54 Smith-Waterman score: 1976; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284) 10 20 30 40 50 60 pF1KB7 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 ALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 EELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKES 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 TCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 TCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGG 190 200 210 220 230 240 250 260 270 280 pF1KB7 GGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF :::::::::::::::::::::::::::::::::::::::::::: NP_005 GGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF 250 260 270 280 >>NP_003915 (OMIM: 209880,603851,613013) paired mesoderm (314 aa) initn: 917 init1: 684 opt: 948 Z-score: 534.7 bits: 107.0 E(85289): 4.8e-23 Smith-Waterman score: 963; 55.1% identity (72.0% similar) in 321 aa overlap (1-284:4-314) 10 20 30 40 50 pF1KB7 MDYSYLNS--YDSCVAAME----ASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPA :.:::::: :.::.:.:. ::::.::..::: .::::.:.: .: :.. ::. NP_003 MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSG-CPS 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 LGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAE : ..:.::.::::: .::.:::::.: . .::.:::::::::::::::::::::::::: NP_003 LTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 THYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCS :::::::::::::::::::::::::::::::::::::::::.: .::. :.. :. : NP_003 THYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSS-GKKSDS 120 130 140 150 160 170 180 190 200 210 220 pF1KB7 SEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLS--------PSPLPVALGSGPGPGPG :.::.:::. : ::::.. : : : .: . ::: . ..::: ::: NP_003 SRDDESKEAK-STDPDSTGGPGPNPNP---TPSCGANGGGGGGPSPAGAPGAAGPG-GPG 180 190 200 210 220 230 230 240 250 260 pF1KB7 PQPLKG------------ALWAGVAGGGG----GGPGAGAAELLKAWQPAESGP----GP .: :: : :..:..:: :::: : : . : : : :: NP_003 GEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAP---GPGPITSIPDSLGGP 240 250 260 270 280 290 270 280 pF1KB7 FSGVLSSFHRKPGP--AL-KTNLF :..::::..: : :: :...: NP_003 FASVLSSLQRPNGAKAALVKSSMF 300 310 >>NP_115485 (OMIM: 604529) homeobox protein orthopedia [ (325 aa) initn: 362 init1: 304 opt: 387 Z-score: 232.4 bits: 51.1 E(85289): 3.3e-06 Smith-Waterman score: 415; 36.7% identity (60.0% similar) in 270 aa overlap (28-263:36-284) 10 20 30 40 50 pF1KB7 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGF------QYSPLRPAFPAAGPPCPA :.::: . .:.. : : . NP_115 DLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITT 10 20 30 40 50 60 60 70 80 90 100 pF1KB7 LGSSNCALGALR---DHQPAPYSAVPYKFFPEPS--GLHE-KRKQRRIRTTFTSAQLKEL .::. .:.. :.::.: .. :.:: : .. ..::.: :: :: :::.:: NP_115 VGSTPASLAVSAKDPDKQPGPQGG------PNPSQAGQQQGQQKQKRHRTRFTPAQLNEL 70 80 90 100 110 110 120 130 140 150 pF1KB7 ERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAS---AKG------ :: ::.::::::. ::::::.: :::.::::::::::::..:...... : : NP_115 ERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTP 120 130 140 150 160 170 160 170 180 190 200 pF1KB7 -------AAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSP ::.::.: :.. :: . .:.. .. . : ....:: ::: : . .. : NP_115 GLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAA-MP-GVSQLPLPPALG-RQQAMAQSL 180 190 200 210 220 230 210 220 230 240 250 260 pF1KB7 LPVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESG------PGP .:..:: :. :.... .:. ::: : .::: : ::: NP_115 SQCSLAAGPPPNS----------MGLSNSLAGSNGAGLQSHL--YQPAFPGMVPASLPGP 240 250 260 270 280 270 280 pF1KB7 FSGVLSSFHRKPGPALKTNLF NP_115 SNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT 290 300 310 320 >>NP_000545 (OMIM: 120970,268000,602225,613829) cone-rod (299 aa) initn: 358 init1: 334 opt: 383 Z-score: 230.6 bits: 50.6 E(85289): 4.2e-06 Smith-Waterman score: 386; 37.5% identity (58.3% similar) in 240 aa overlap (48-279:7-222) 20 30 40 50 60 70 pF1KB7 ASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCAL-GALRD--HQPAPYSAVP : : . . :: : : :: .:: ..: NP_000 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAP 10 20 30 80 90 100 110 120 130 pF1KB7 YKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARV ::::: ::::: .::.::: .::.:.:::.:.:::.::::.: :.:: NP_000 -------------RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRV 40 50 60 70 80 140 150 160 170 180 190 pF1KB7 QVWFQNRRAKFR--KQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASL ::::.::::: : .:.. . . .: : :. .. . .. : . .: : : . .. NP_000 QVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTD-VC-PDPLGISDS 90 100 110 120 130 140 200 210 220 230 240 250 pF1KB7 PPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAELLK :: :: : ::. :: : .:. . .:: : ::....: :. .: NP_000 YSPPLPG---PSGSPTT-AVATVSIWSPA-SESPLPEAQRAGLVASG---PSLTSAPYAM 150 160 170 180 190 260 270 280 pF1KB7 AWQPAE---SGPGPFSGVLSSFHRKPGPALKTNLF .. :: :.:. . : ::. : : NP_000 TYAPASAFCSSPSAY-GSPSSYFSGLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTS 200 210 220 230 240 250 >>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30 (562 aa) initn: 510 init1: 355 opt: 386 Z-score: 229.0 bits: 51.2 E(85289): 5.1e-06 Smith-Waterman score: 402; 43.9% identity (60.6% similar) in 198 aa overlap (87-269:325-518) 60 70 80 90 100 110 pF1KB7 CALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPD :::::: :::::: ::.::::.: .::::: NP_620 LLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPD 300 310 320 330 340 350 120 130 140 150 160 170 pF1KB7 IYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAA--GAKKGEARCSSED ..::::::...:::::::::::::::::.::.:.:.. : : .. : NP_620 VFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYL 360 370 380 390 400 410 180 190 200 210 220 pF1KB7 DDSKESTCSPTPDS--TA----------SLPPPPAPGLASPRLSPSPLPVALGSGPGPGP : : :. :: :: ::::::. . : .: : . ::.. : NP_620 DASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHP 420 430 440 450 460 470 230 240 250 260 270 280 pF1KB7 G-PQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKT . .: : :.. .: ... :: ::. :: : ::.:. NP_620 AFISPAFGRLFSTMAPLTSAST---AAALLRQPTPAVEGAVA-SGALADPATAAADRRAS 480 490 500 510 520 530 pF1KB7 NLF NP_620 SIAALRLKAKEHAAQLTQLNILPGTSTGKEVC 540 550 560 >>NP_001306003 (OMIM: 605726,610362,610381,613757) retin (230 aa) initn: 375 init1: 314 opt: 375 Z-score: 227.7 bits: 49.7 E(85289): 6.1e-06 Smith-Waterman score: 388; 38.6% identity (55.0% similar) in 249 aa overlap (16-257:1-230) 10 20 30 40 50 pF1KB7 MDYSYLNSYDSCVAAMEASAYG-DF-GACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCA : : . : :: :: : : : : ::..:: : : . NP_001 MPAPVEGTDFPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSHQ-- 10 20 30 40 60 70 80 90 100 110 pF1KB7 LGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIY .::. .:. :. . :. :.:.:: :::::. ::..:::.: .::::.: NP_001 VGAMF-LSPGEGPATEGGGLG-PGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVY 50 60 70 80 90 100 120 130 140 150 160 170 pF1KB7 TREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSK .::::: :. : :.::::::::::::.:.::: :..::..: .. : NP_001 SREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPAL--------- 110 120 130 140 150 180 190 200 210 220 230 pF1KB7 ESTCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPG--PGPGPQPLKGALWAGVA : : . : : .:: : :. :: :: ::: . ::. . .. : : NP_001 -PFARP-PAMSLPLEPWLGPG---PPAVPG-LPRLLGPGPGLQASFGPHAFAPTFADGFA 160 170 180 190 200 240 250 260 270 280 pF1KB7 GGGGGG---PGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF .. : : .:: :: NP_001 LEEASLRLLAKEHAQALDRAWPPA 210 220 230 >>NP_006483 (OMIM: 136760,606014) homeobox protein arist (343 aa) initn: 372 init1: 324 opt: 371 Z-score: 223.5 bits: 49.5 E(85289): 1e-05 Smith-Waterman score: 371; 36.0% identity (57.3% similar) in 253 aa overlap (28-275:98-332) 10 20 30 40 50 pF1KB7 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLR-PAFPAAGPPCPALGSSN :. ..: :: . : :: :: . NP_006 PAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN-LQGSPG 70 80 90 100 110 120 60 70 80 90 100 110 pF1KB7 CALGALRDHQPAPYSAVPYKFFPEPSGL-HEKRKQRRIRTTFTSAQLKELERVFAETHYP :..: : : : .:. : ..: :.:: ::::.. ::.:::.:: .:::: NP_006 PCLASL--HLPLS----PG--LPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYP 130 140 150 160 170 120 130 140 150 160 170 pF1KB7 DIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAK-GAAGAAGAKKGEARCSSED :.:.::.:::. :::::::::::::::::.::.:: .. . : ..: . ... NP_006 DVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDS 180 190 200 210 220 230 180 190 200 210 220 230 pF1KB7 DDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSPL--PVALGSGPGPGPGPQPLKGALW . ... .: : . : .: :.::. ::: : . : : : .: NP_006 HPQLQNSLWASPGSGS----PGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAH 240 250 260 270 280 290 240 250 260 270 280 pF1KB7 AGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF :. . : : :. ....:. .: : : :.. :: NP_006 PGIYSIHGFPPTLGG----HSFEPSSDGDYK-SPSLVSLRVKPKEPPGLLNWTT 300 310 320 330 340 >>XP_016870292 (OMIM: 604675) PREDICTED: paired mesoderm (193 aa) initn: 365 init1: 335 opt: 365 Z-score: 223.2 bits: 48.6 E(85289): 1.1e-05 Smith-Waterman score: 365; 49.6% identity (70.7% similar) in 133 aa overlap (79-203:30-161) 50 60 70 80 90 100 pF1KB7 CPALGSSNCALGALRDHQPAPYSAVPYKFFPEP---SGLHEKRKQRRIRTTFTSAQLKEL : : :. ..:.:::: ::::.:.::. : XP_016 MGPLHRETGPERSGHRLKVTELGCGEGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQAL 10 20 30 40 50 110 120 130 140 150 160 pF1KB7 ERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKK :::: .::::: ..::::: ...:.::::::::::::::::..::: :. .:. . . XP_016 ERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYS 60 70 80 90 100 110 170 180 190 200 210 220 pF1KB7 GEARCSSEDDDSKESTCSPTPDS-TASLP----PPPAPGLASPRLSPSPLPVALGSGPGP :: . . .. :: : ::: : :: .:: ..: XP_016 QEAAIE-QPVAPRPTALSPDYLSWTASSPYSTVPPYSPGSSGPATPGVNMANSIASLRLK 120 130 140 150 160 170 230 240 250 260 270 280 pF1KB7 GPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALK XP_016 AKEFSLHHSQVPTVN 180 190 >>NP_057391 (OMIM: 604675) paired mesoderm homeobox prot (253 aa) initn: 421 init1: 335 opt: 365 Z-score: 221.8 bits: 48.8 E(85289): 1.3e-05 Smith-Waterman score: 365; 49.6% identity (70.7% similar) in 133 aa overlap (79-203:90-221) 50 60 70 80 90 100 pF1KB7 CPALGSSNCALGALRDHQPAPYSAVPYKFFPEP---SGLHEKRKQRRIRTTFTSAQLKEL : : :. ..:.:::: ::::.:.::. : NP_057 GARAEAREGAAREPSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQAL 60 70 80 90 100 110 110 120 130 140 150 160 pF1KB7 ERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKK :::: .::::: ..::::: ...:.::::::::::::::::..::: :. .:. . . NP_057 ERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYS 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB7 GEARCSSEDDDSKESTCSPTPDS-TASLP----PPPAPGLASPRLSPSPLPVALGSGPGP :: . . .. :: : ::: : :: .:: ..: NP_057 QEAAIE-QPVAPRPTALSPDYLSWTASSPYSTVPPYSPGSSGPATPGVNMANSIASLRLK 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB7 GPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALK NP_057 AKEFSLHHSQVPTVN 240 250 >>NP_005020 (OMIM: 107250,602669,610623) pituitary homeo (302 aa) initn: 387 init1: 291 opt: 363 Z-score: 219.8 bits: 48.6 E(85289): 1.7e-05 Smith-Waterman score: 365; 39.7% identity (55.7% similar) in 219 aa overlap (45-248:21-228) 20 30 40 50 60 70 pF1KB7 AMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALGALRDHQPAPYSAVP :: : : : .: : . : : .: NP_005 MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASAS-LP 10 20 30 40 80 90 100 110 120 130 pF1KB7 YKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARV :: ..: :.:::: :: ::: ::.::: .: ...:::. ::::.:. .:::::: NP_005 GGS-PEDGSL--KKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARV 50 60 70 80 90 100 140 150 160 170 180 190 pF1KB7 QVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPP .:::.:::::.::.::. .:. :. .: : :. : . : . : :: NP_005 RVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALA--PP 110 120 130 140 150 160 200 210 220 230 pF1KB7 ------PPA-------PGLASPRLSPSPLPVALGSGPGPG--PGPQPLKGALWAGVAGGG : : : ..: .:: : .: . :. . :: : ::: : : NP_005 LAAKTFPFAFNSVNVGPLASQPVFSP-PSSIAASMVPSAAAAPGTVPGPGAL----QGLG 170 180 190 200 210 240 250 260 270 280 pF1KB7 GGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF :: :: . : NP_005 GGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSY 220 230 240 250 260 270 284 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:41:52 2016 done: Mon Nov 7 23:41:53 2016 Total Scan time: 8.330 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]